Variant report

Variant	rs419398
Chromosome Location	chr21:15617308-15617309
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:15612009..15614501-chr21:15615453..15618275,2	K562	blood:
2	chr21:15616597..15618358-chr21:15624634..15626645,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs108885	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1739487	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs367249	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs367620	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs367718	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs372649	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs375370	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs377297	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs378280	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs379724	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs384358	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs385758	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs389493	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs400385	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs402462	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs405396	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs410757	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs411359	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs424021	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs424759	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs430245	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs431238	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs434549	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs437162	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs437521	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1058202	chr21:14706767-15628668	Weak transcription Active TSS ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	38 gene(s)	inside rSNPs	diseases
2	nsv869466	chr21:15482572-15683385	Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1066738	chr21:15587815-15642948	Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv520538	chr21:15615220-15660539	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv1062532	chr21:15616629-15654501	Active TSS Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv1067478	chr21:15616629-15657107	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15616200-15619200	Enhancers	Primary hematopoietic stem cells short term culture	blood

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