Variant report

Variant	rs419493
Chromosome Location	chr6:101743594-101743595
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1415946	1.00[JPT][hapmap]
rs1475916	1.00[JPT][hapmap]
rs2518226	1.00[JPT][hapmap]
rs2518228	1.00[JPT][hapmap]
rs2518231	1.00[JPT][hapmap]
rs2518234	1.00[JPT][hapmap]
rs2518235	1.00[JPT][hapmap]
rs2518238	1.00[JPT][hapmap]
rs2518249	1.00[JPT][hapmap]
rs2579933	1.00[JPT][hapmap]
rs2579934	1.00[JPT][hapmap]
rs2788276	1.00[JPT][hapmap]
rs2797366	1.00[ASN][1000 genomes]
rs2852508	1.00[JPT][hapmap]
rs2852532	1.00[JPT][hapmap]
rs3811080	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs512464	0.82[ASN][1000 genomes]
rs9498574	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020400	chr6:101172705-101981665	Weak transcription Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv538390	chr6:101172705-101981665	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:101741400-101743800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:101742000-101745000	Enhancers	Muscle Satellite Cultured Cells	--
3	chr6:101742400-101744000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:101743400-101745400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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