Variant report

Variant	rs42107
Chromosome Location	chr7:27721795-27721796
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs42100	0.82[AMR][1000 genomes]
rs42101	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs42102	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs42103	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs42105	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs42106	0.85[AFR][1000 genomes]
rs42108	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs42109	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs42110	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs42107	HIBADH	cis	multi-tissue	Pritchard
rs42107	HIBADH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27718600-27723800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr7:27719200-27726000	Weak transcription	Osteobl	bone
3	chr7:27720800-27724800	Weak transcription	HepG2	liver
4	chr7:27720800-27726000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr7:27720800-27727600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:27721000-27726000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr7:27721000-27726000	Weak transcription	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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