Variant report

Variant	rs42100
Chromosome Location	chr7:27715708-27715709
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10486549	0.84[JPT][hapmap]
rs12667470	0.85[JPT][hapmap]
rs12670250	0.90[JPT][hapmap]
rs17155498	0.91[JPT][hapmap]
rs17155505	0.91[JPT][hapmap]
rs17155537	0.85[JPT][hapmap]
rs2391450	0.91[JPT][hapmap]
rs42101	0.91[CEU][hapmap];1.00[CHB][hapmap];0.89[JPT][hapmap];0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs42102	0.82[CEU][hapmap];0.82[AMR][1000 genomes]
rs42103	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs42105	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs42106	0.83[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs42107	0.82[AMR][1000 genomes]
rs42108	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs42109	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs42110	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs42115	0.90[EUR][1000 genomes]
rs759268	0.91[JPT][hapmap]
rs7778454	0.87[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs42100	HIBADH	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27711400-27716200	Weak transcription	NHDF-Ad	bronchial
2	chr7:27711400-27717000	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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