Variant report

Variant	rs42115
Chromosome Location	chr7:27723870-27723871
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10267854	0.81[CHD][hapmap]
rs12666082	0.81[ASN][1000 genomes]
rs17155702	0.87[CHD][hapmap]
rs42100	0.86[CEU][hapmap];0.90[EUR][1000 genomes]
rs42101	0.96[CEU][hapmap];0.83[GIH][hapmap];0.89[TSI][hapmap];0.95[EUR][1000 genomes]
rs42103	0.96[EUR][1000 genomes]
rs42105	0.97[EUR][1000 genomes]
rs42106	0.91[EUR][1000 genomes]
rs42108	0.96[EUR][1000 genomes]
rs42109	0.95[EUR][1000 genomes]
rs42110	0.96[EUR][1000 genomes]
rs7784038	0.81[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs42115	KIAA0087	cis	cerebellum	SCAN
rs42115	HIBADH	cis	lymphoblastoid	seeQTL
rs42115	HIBADH	cis	cerebellum	SCAN
rs42115	HIBADH	cis	parietal	SCAN
rs42115	HIBADH	Cis_1M	lymphoblastoid	RTeQTL
rs42115	TAX1BP1	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27719200-27726000	Weak transcription	Osteobl	bone
2	chr7:27720800-27724800	Weak transcription	HepG2	liver
3	chr7:27720800-27726000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:27720800-27727600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr7:27721000-27726000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr7:27721000-27726000	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links