Variant report

Variant	rs12666082
Chromosome Location	chr7:27726510-27726511
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10155851	0.81[EUR][1000 genomes]
rs10225487	0.81[EUR][1000 genomes]
rs10267854	0.90[CEU][hapmap]
rs10277437	0.82[EUR][1000 genomes]
rs10486549	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs10486559	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10951184	0.95[CEU][hapmap]
rs11550134	0.83[EUR][1000 genomes]
rs12667470	0.95[CEU][hapmap]
rs12670250	0.90[CEU][hapmap]
rs16874364	0.81[EUR][1000 genomes]
rs16874393	0.86[CEU][hapmap]
rs16874395	0.86[CEU][hapmap]
rs17150563	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17155498	0.95[CEU][hapmap]
rs17155505	0.95[CEU][hapmap]
rs17155537	0.95[CEU][hapmap];0.81[EUR][1000 genomes]
rs17155702	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17155950	0.85[CEU][hapmap]
rs17155969	0.80[CEU][hapmap]
rs17155971	0.82[CEU][hapmap]
rs2074579	0.95[CEU][hapmap];0.80[CHB][hapmap];0.81[EUR][1000 genomes]
rs2074769	1.00[CEU][hapmap];0.81[CHB][hapmap];0.87[JPT][hapmap];0.85[EUR][1000 genomes]
rs2108309	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2158388	0.82[EUR][1000 genomes]
rs2192559	0.95[CEU][hapmap]
rs2237339	0.85[EUR][1000 genomes]
rs2237340	0.81[EUR][1000 genomes]
rs2237341	0.85[EUR][1000 genomes]
rs2299106	0.83[EUR][1000 genomes]
rs2391450	0.86[CEU][hapmap]
rs2391488	0.82[EUR][1000 genomes]
rs3779473	0.94[CEU][hapmap];0.81[EUR][1000 genomes]
rs3940270	0.83[CEU][hapmap]
rs42115	0.81[ASN][1000 genomes]
rs4719907	0.81[EUR][1000 genomes]
rs4719908	0.95[CEU][hapmap];0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs4722741	0.80[EUR][1000 genomes]
rs57932688	0.85[EUR][1000 genomes]
rs58314651	0.85[EUR][1000 genomes]
rs58857361	0.95[EUR][1000 genomes]
rs62449629	0.83[EUR][1000 genomes]
rs62449639	0.85[EUR][1000 genomes]
rs62449640	0.85[EUR][1000 genomes]
rs62454806	0.83[EUR][1000 genomes]
rs62454908	0.82[EUR][1000 genomes]
rs62454914	0.86[EUR][1000 genomes]
rs62454945	0.82[EUR][1000 genomes]
rs6462048	0.81[EUR][1000 genomes]
rs6944251	0.91[CEU][hapmap];0.81[CHB][hapmap]
rs6944913	0.81[EUR][1000 genomes]
rs6972821	0.95[CEU][hapmap]
rs72598505	0.87[EUR][1000 genomes]
rs759268	0.95[CEU][hapmap];0.82[EUR][1000 genomes]
rs7784038	0.90[CEU][hapmap]
rs7803019	0.81[EUR][1000 genomes]
rs7803227	0.95[CEU][hapmap];0.81[CHB][hapmap];0.81[EUR][1000 genomes]
rs7809735	1.00[CEU][hapmap];0.83[EUR][1000 genomes]
rs9639563	0.81[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27720800-27727600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr7:27725600-27726600	Enhancers	HUVEC	blood vessel
3	chr7:27726200-27727600	Weak transcription	NHDF-Ad	bronchial
4	chr7:27726200-27733000	Weak transcription	HepG2	liver
5	chr7:27726200-27733200	Weak transcription	Osteobl	bone
6	chr7:27726400-27728200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr7:27726400-27728400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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