Variant report

Variant	rs7809735
Chromosome Location	chr7:27862910-27862911
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27856504..27859420-chr7:27862843..27864597,2	K562	blood:
2	chr7:27861346..27863328-chr7:27865686..27868649,2	K562	blood:

Variant related genes	Relation type
ENSG00000106052	Chromatin interaction

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10155851	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10225487	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10267854	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10277437	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10486549	0.91[CEU][hapmap]
rs10486559	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10951184	1.00[CEU][hapmap];0.84[CHB][hapmap];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12666082	0.83[EUR][1000 genomes]
rs16874364	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16874393	0.86[CEU][hapmap]
rs16874395	0.87[CEU][hapmap]
rs17150563	0.84[EUR][1000 genomes]
rs17155537	0.91[CEU][hapmap]
rs17155702	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17155943	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17155950	0.91[CEU][hapmap]
rs17155969	0.81[CEU][hapmap]
rs17155971	0.82[CEU][hapmap]
rs2051830	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2074579	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2074769	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2107413	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2108309	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2158388	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2237339	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2237340	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2237341	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2285931	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2299106	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2391450	0.87[CEU][hapmap]
rs2391488	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3779473	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3940270	0.89[CEU][hapmap]
rs4719907	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4719908	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4722741	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57932688	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58314651	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62449629	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62449639	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62449640	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62451077	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62451079	0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62454806	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs62454945	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6462048	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6462049	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6462052	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6462053	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6944251	0.95[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6944913	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6971813	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6972821	1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72598505	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs759268	0.95[CEU][hapmap]
rs7784038	0.95[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7801301	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7803019	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7803227	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758109	chr7:27793616-27972869	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2759520	chr7:27793616-27972869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv5677	chr7:27839504-27884505	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1018550	chr7:27844038-27925645	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:114 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27784800-27878400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr7:27798600-27874000	Weak transcription	Brain Angular Gyrus	brain
3	chr7:27806000-27882600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr7:27806400-27878600	Weak transcription	Right Ventricle	heart
5	chr7:27815600-27874000	Weak transcription	Pancreas	Pancrea
6	chr7:27823800-27878000	Weak transcription	Spleen	Spleen
7	chr7:27824200-27876800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr7:27825600-27874000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr7:27826000-27870000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr7:27827000-27881800	Weak transcription	Small Intestine	intestine
11	chr7:27827600-27878400	Weak transcription	Fetal Kidney	kidney
12	chr7:27834400-27873600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr7:27835200-27878200	Weak transcription	Gastric	stomach
14	chr7:27836400-27867400	Weak transcription	HUVEC	blood vessel
15	chr7:27836400-27878000	Weak transcription	Brain Inferior Temporal Lobe	brain
16	chr7:27836400-27882200	Weak transcription	HUES6 Cell Line	embryonic stem cell
17	chr7:27837000-27873800	Weak transcription	Psoas Muscle	Psoas
18	chr7:27840000-27880600	Weak transcription	Hela-S3	cervix
19	chr7:27842400-27877800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr7:27843600-27877000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr7:27847600-27885200	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr7:27848400-27871600	Weak transcription	HMEC	breast
23	chr7:27848400-27873400	Weak transcription	Rectal Smooth Muscle	rectum
24	chr7:27848600-27868200	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr7:27848600-27871000	Weak transcription	K562	blood
26	chr7:27849200-27873400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr7:27850200-27881400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr7:27851200-27863800	Strong transcription	Liver	Liver
29	chr7:27853000-27868800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr7:27853400-27864000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr7:27854200-27864000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
32	chr7:27854200-27882200	Weak transcription	Brain Substantia Nigra	brain
33	chr7:27855200-27863800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr7:27855600-27863400	Strong transcription	Primary hematopoietic stem cells	blood
35	chr7:27855600-27864200	Strong transcription	Primary T cells fromperipheralblood	blood
36	chr7:27856000-27882200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
37	chr7:27856600-27866000	Weak transcription	Fetal Intestine Small	intestine
38	chr7:27856600-27874000	Weak transcription	Fetal Stomach	stomach
39	chr7:27856800-27865600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr7:27856800-27867400	Weak transcription	Brain Anterior Caudate	brain
41	chr7:27856800-27868200	Weak transcription	Lung	lung
42	chr7:27856800-27871800	Weak transcription	NH-A	brain
43	chr7:27856800-27873600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr7:27856800-27874000	Weak transcription	Brain Hippocampus Middle	brain
45	chr7:27856800-27874200	Weak transcription	GM12878-XiMat	blood
46	chr7:27857000-27867600	Weak transcription	HUES48 Cell Line	embryonic stem cell
47	chr7:27857200-27875600	Weak transcription	NHEK	skin
48	chr7:27857200-27877800	Weak transcription	Brain Cingulate Gyrus	brain
49	chr7:27857800-27871200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
50	chr7:27858000-27866600	Weak transcription	Primary T helper naive cells from peripheral blood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links