Variant report

Variant	rs2108309
Chromosome Location	chr7:27741936-27741937
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27740264..27742549-chr7:27743332..27746196,2	K562	blood:
2	chr7:27700850..27702613-chr7:27740814..27743637,2	K562	blood:
3	chr7:27674511..27676385-chr7:27740361..27743199,2	K562	blood:
4	chr7:27741492..27744405-chr7:27746292..27747950,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106049	Chromatin interaction

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10155851	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10225487	0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10267854	0.88[CEU][hapmap];0.91[CHB][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10277437	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10486549	0.89[CEU][hapmap]
rs10486559	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10951184	0.94[CEU][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11766320	0.80[ASN][1000 genomes]
rs12666082	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12667470	0.94[CEU][hapmap]
rs12670250	0.88[CEU][hapmap]
rs16874364	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17150563	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17155498	0.95[CEU][hapmap]
rs17155505	0.94[CEU][hapmap]
rs17155537	0.89[CEU][hapmap]
rs17155666	0.80[ASN][1000 genomes]
rs17155702	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17155950	0.83[CEU][hapmap]
rs2041021	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2051830	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2074579	0.94[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2074769	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2107413	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2158388	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2192559	0.95[CEU][hapmap]
rs2237339	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2237340	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2237341	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2285931	0.83[EUR][1000 genomes]
rs2299106	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2391450	0.84[CEU][hapmap]
rs2391488	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs3779473	0.94[CEU][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3940270	0.82[CEU][hapmap]
rs4719907	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4719908	0.95[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4722741	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55738305	0.80[ASN][1000 genomes]
rs57932688	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58314651	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58857361	0.82[EUR][1000 genomes]
rs62449629	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62449639	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62449640	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62454806	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62454807	0.80[ASN][1000 genomes]
rs62454945	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62454947	0.80[ASN][1000 genomes]
rs6462043	0.80[ASN][1000 genomes]
rs6462048	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6462049	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6462052	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6462053	0.89[EUR][1000 genomes]
rs6944251	0.89[CEU][hapmap];0.91[CHB][hapmap];0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6944913	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6950949	0.80[ASN][1000 genomes]
rs6957836	0.80[ASN][1000 genomes]
rs6958125	0.80[ASN][1000 genomes]
rs6971813	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6972821	0.94[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6974991	0.80[ASN][1000 genomes]
rs72598505	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs759268	0.94[CEU][hapmap]
rs7784038	0.88[CEU][hapmap];0.91[CHB][hapmap];0.87[EUR][1000 genomes]
rs7801301	0.87[EUR][1000 genomes]
rs7803019	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7803227	0.95[CEU][hapmap];0.91[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7809735	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9638846	0.80[ASN][1000 genomes]
rs9639563	0.83[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27729600-27742200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:27734200-27742600	Weak transcription	Osteobl	bone
3	chr7:27738000-27742400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr7:27738200-27749000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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