Variant report

Variant	rs17150563
Chromosome Location	chr7:27727849-27727850
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27716154..27718017-chr7:27726881..27729389,2	K562	blood:

Extended variants
information (count: 58 )
Associated
traits (count: 6 )

rSNPs within LD-proxies of this variant (count:57)

rs_ID	r²[population]
rs10155851	0.82[EUR][1000 genomes]
rs10225487	0.83[EUR][1000 genomes]
rs10267854	0.91[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap]
rs10277437	0.83[EUR][1000 genomes]
rs10486549	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs10486559	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs10951184	0.95[CEU][hapmap];0.86[CHD][hapmap];0.82[MEX][hapmap];0.87[TSI][hapmap]
rs11550134	0.84[EUR][1000 genomes]
rs12666082	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12667470	0.95[CEU][hapmap]
rs12670250	0.91[CEU][hapmap]
rs16874364	0.82[EUR][1000 genomes]
rs16874393	0.81[CEU][hapmap]
rs16874395	0.81[CEU][hapmap]
rs17155498	0.95[CEU][hapmap]
rs17155505	0.95[CEU][hapmap]
rs17155537	0.91[CEU][hapmap];0.82[EUR][1000 genomes]
rs17155702	1.00[CEU][hapmap];0.86[CHB][hapmap];0.98[CHD][hapmap];0.93[GIH][hapmap];0.86[JPT][hapmap];0.95[MEX][hapmap];0.97[TSI][hapmap];0.86[EUR][1000 genomes]
rs17155950	0.86[CEU][hapmap]
rs2074579	0.95[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs2074769	1.00[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.86[EUR][1000 genomes]
rs2108309	1.00[CEU][hapmap];0.95[CHB][hapmap];0.86[JPT][hapmap];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2158388	0.83[EUR][1000 genomes]
rs2192559	0.95[CEU][hapmap]
rs2237339	0.86[EUR][1000 genomes]
rs2237340	0.82[EUR][1000 genomes]
rs2237341	0.86[EUR][1000 genomes]
rs2299106	0.84[EUR][1000 genomes]
rs2391450	0.86[CEU][hapmap]
rs2391488	0.83[EUR][1000 genomes]
rs3779473	0.94[CEU][hapmap];0.82[EUR][1000 genomes]
rs3940270	0.83[CEU][hapmap]
rs4719907	0.82[EUR][1000 genomes]
rs4719908	0.95[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs4722741	0.81[EUR][1000 genomes]
rs57932688	0.86[EUR][1000 genomes]
rs58314651	0.86[EUR][1000 genomes]
rs58857361	0.94[EUR][1000 genomes]
rs62449629	0.84[EUR][1000 genomes]
rs62449639	0.86[EUR][1000 genomes]
rs62449640	0.86[EUR][1000 genomes]
rs62454806	0.84[EUR][1000 genomes]
rs62454908	0.84[EUR][1000 genomes]
rs62454914	0.88[EUR][1000 genomes]
rs62454945	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6462052	0.81[EUR][1000 genomes]
rs6462053	0.81[EUR][1000 genomes]
rs6944251	0.91[CEU][hapmap];0.86[CHB][hapmap]
rs6944913	0.82[EUR][1000 genomes]
rs6972821	0.95[CEU][hapmap];0.81[CHD][hapmap];0.82[MEX][hapmap];0.89[TSI][hapmap];0.80[EUR][1000 genomes]
rs72598505	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs759268	0.95[CEU][hapmap];0.84[EUR][1000 genomes]
rs7784038	0.91[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];0.83[MEX][hapmap];0.84[TSI][hapmap]
rs7803019	0.82[EUR][1000 genomes]
rs7803227	0.95[CEU][hapmap];0.86[CHB][hapmap];0.82[EUR][1000 genomes]
rs7809735	1.00[CEU][hapmap];0.84[CHB][hapmap];0.84[EUR][1000 genomes]
rs9639563	0.87[CHB][hapmap];0.84[CHD][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

mRNA abundance (count:6)

SNP	Gene	Cis/trans	Tissue	Source
rs17150563	HOXA13	cis	parietal	SCAN
rs17150563	CRHR2	cis	parietal	SCAN
rs17150563	TAX1BP1	cis	cerebellum	SCAN
rs17150563	PRR15	cis	parietal	SCAN
rs17150563	SNX10	cis	cerebellum	SCAN
rs17150563	SCRN1	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27726200-27733000	Weak transcription	HepG2	liver
2	chr7:27726200-27733200	Weak transcription	Osteobl	bone
3	chr7:27726400-27728200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr7:27726400-27728400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr7:27727600-27729400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr7:27727800-27728200	Flanking Active TSS	NHDF-Ad	bronchial

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