Variant report

Variant	rs7801301
Chromosome Location	chr7:27848963-27848964
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27842369..27845574-chr7:27847275..27850626,3	K562	blood:
2	chr7:27848154..27850966-chr7:27851903..27854305,3	MCF-7	breast:

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10155851	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10225487	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10267854	0.95[CEU][hapmap];0.87[MEX][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10277437	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10486549	0.86[CEU][hapmap]
rs10486559	0.95[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs10951184	1.00[CEU][hapmap];0.82[GIH][hapmap];0.87[MEX][hapmap];0.82[TSI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs16874364	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16874393	0.86[CEU][hapmap]
rs16874395	0.86[CEU][hapmap]
rs17155537	0.86[CEU][hapmap]
rs17155702	0.95[CEU][hapmap];0.93[GIH][hapmap];0.91[MEX][hapmap];0.92[TSI][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17155943	0.80[EUR][1000 genomes]
rs17155950	0.91[CEU][hapmap];0.86[CHB][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17155969	0.82[CEU][hapmap]
rs17155971	0.82[CEU][hapmap]
rs17611937	0.90[CHD][hapmap]
rs2051829	0.88[CHD][hapmap]
rs2051830	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2074579	0.95[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2074769	0.95[CEU][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2107413	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2108309	0.94[CEU][hapmap];0.87[EUR][1000 genomes]
rs2158388	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2237337	0.88[CHD][hapmap]
rs2237339	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2237340	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2237341	0.89[EUR][1000 genomes]
rs2285930	0.81[AMR][1000 genomes]
rs2285931	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2299106	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2391450	0.82[CEU][hapmap]
rs2391488	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs3779473	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3940270	0.89[CEU][hapmap];0.83[CHB][hapmap];0.82[AMR][1000 genomes]
rs4719907	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4719908	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4722732	0.81[CHB][hapmap]
rs4722739	0.88[CHD][hapmap]
rs4722741	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs57932688	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs58314651	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62449629	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62449639	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62449640	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs62451077	0.80[EUR][1000 genomes]
rs62454806	0.83[EUR][1000 genomes]
rs62454945	0.82[EUR][1000 genomes]
rs6462048	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6462049	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6462052	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6462053	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6944251	0.95[CEU][hapmap];0.89[EUR][1000 genomes]
rs6944913	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6971813	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6972821	1.00[CEU][hapmap];0.87[MEX][hapmap];0.84[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6978847	0.81[CHB][hapmap]
rs72598505	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs759268	0.91[CEU][hapmap]
rs7784038	0.95[CEU][hapmap];0.87[MEX][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7803019	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7803227	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7809735	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9639564	0.88[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758109	chr7:27793616-27972869	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2759520	chr7:27793616-27972869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
5	nsv5677	chr7:27839504-27884505	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	2 gene(s)	inside rSNPs	diseases
6	nsv1018550	chr7:27844038-27925645	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
7	nsv1030685	chr7:27844038-28177301	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27781000-27861800	Weak transcription	Aorta	Aorta
2	chr7:27784800-27878400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr7:27790600-27857400	Weak transcription	Colonic Mucosa	Colon
4	chr7:27798600-27874000	Weak transcription	Brain Angular Gyrus	brain
5	chr7:27801200-27851800	Weak transcription	Fetal Brain Male	brain
6	chr7:27801600-27852800	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr7:27805800-27857600	Weak transcription	Esophagus	oesophagus
8	chr7:27806000-27882600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:27806400-27878600	Weak transcription	Right Ventricle	heart
10	chr7:27815600-27874000	Weak transcription	Pancreas	Pancrea
11	chr7:27823800-27878000	Weak transcription	Spleen	Spleen
12	chr7:27824200-27876800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr7:27825600-27874000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr7:27826000-27870000	Weak transcription	Placenta Amnion	Placenta Amnion
15	chr7:27826600-27852800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr7:27827000-27881800	Weak transcription	Small Intestine	intestine
17	chr7:27827600-27878400	Weak transcription	Fetal Kidney	kidney
18	chr7:27832600-27852800	Weak transcription	Lung	lung
19	chr7:27832600-27852800	Weak transcription	Thymus	Thymus
20	chr7:27832600-27856000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
21	chr7:27832800-27853200	Weak transcription	Fetal Muscle Leg	muscle
22	chr7:27833000-27858000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr7:27833600-27856000	Weak transcription	Brain Anterior Caudate	brain
24	chr7:27833600-27858400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
25	chr7:27834400-27873600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr7:27834800-27855600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr7:27835000-27856000	Weak transcription	GM12878-XiMat	blood
28	chr7:27835200-27856000	Weak transcription	Sigmoid Colon	Sigmoid Colon
29	chr7:27835200-27857600	Weak transcription	Stomach Smooth Muscle	stomach
30	chr7:27835200-27878200	Weak transcription	Gastric	stomach
31	chr7:27836000-27856400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr7:27836400-27856000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr7:27836400-27856000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
34	chr7:27836400-27867400	Weak transcription	HUVEC	blood vessel
35	chr7:27836400-27878000	Weak transcription	Brain Inferior Temporal Lobe	brain
36	chr7:27836400-27882200	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr7:27836600-27852600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr7:27836800-27851400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr7:27836800-27852800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr7:27836800-27852800	Weak transcription	Fetal Stomach	stomach
41	chr7:27836800-27856400	Weak transcription	Fetal Muscle Trunk	muscle
42	chr7:27837000-27856400	Weak transcription	Left Ventricle	heart
43	chr7:27837000-27873800	Weak transcription	Psoas Muscle	Psoas
44	chr7:27837600-27852800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
45	chr7:27837600-27853400	Weak transcription	Rectal Mucosa Donor 29	rectum
46	chr7:27837600-27857200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
47	chr7:27838600-27851200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr7:27839000-27856400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr7:27839800-27851200	Weak transcription	Liver	Liver
50	chr7:27840000-27880600	Weak transcription	Hela-S3	cervix

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