Variant report

Variant	rs421723
Chromosome Location	chr9:102117286-102117287
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12555122	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs188940	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs323738	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs56305307	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67121785	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893620	chr9:102029791-102194921	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv831667	chr9:102068047-102285691	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1046898	chr9:102111890-102163313	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:102114200-102118200	Weak transcription	Psoas Muscle	Psoas
2	chr9:102114800-102131600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:102115600-102117800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr9:102115600-102118200	Weak transcription	Fetal Muscle Trunk	muscle
5	chr9:102116400-102118200	Weak transcription	Fetal Muscle Leg	muscle
6	chr9:102116400-102120600	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr9:102116400-102121000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr9:102116400-102124400	Weak transcription	Colon Smooth Muscle	Colon
9	chr9:102116600-102117800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr9:102116600-102118000	Weak transcription	Adipose Nuclei	Adipose
11	chr9:102116600-102118600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr9:102116600-102118800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr9:102116600-102118800	Weak transcription	Osteobl	bone
14	chr9:102116600-102119000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:102116800-102118000	Weak transcription	Liver	Liver
16	chr9:102116800-102118000	Weak transcription	NHDF-Ad	bronchial
17	chr9:102116800-102118400	Weak transcription	NHLF	lung
18	chr9:102117000-102118000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr9:102117000-102118600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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