Variant report
Variant | rs4233941 |
---|---|
Chromosome Location | chr2:67931187-67931188 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:1 , 50 per page) page:
1
No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr2:67928080..67929836-chr2:67931169..67933250,2 | MCF-7 | breast: |
No data |
No data |
No data |
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rs_ID | r2[population] |
---|---|
rs10190216 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs10210921 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs1367460 | 0.93[CEU][hapmap];0.93[YRI][hapmap] |
rs1430760 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs1430761 | 0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs1430767 | 0.93[ASN][1000 genomes] |
rs1835462 | 0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rs1864573 | 0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes] |
rs2060042 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4671195 | 1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4671196 | 0.93[ASN][1000 genomes] |
rs6710930 | 0.93[ASN][1000 genomes] |
rs6724226 | 0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs6733362 | 0.87[CEU][hapmap] |
rs934311 | 0.88[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs966442 | 0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv534389 | chr2:67388428-68225338 | Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 36 gene(s) | inside rSNPs | diseases |
2 | nsv1007345 | chr2:67870225-67980094 | Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Weak transcription Genic enhancers Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
3 | nsv834250 | chr2:67897722-68051532 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr2:67931000-67932000 | Enhancers | Brain Germinal Matrix | brain |