Variant report
| Variant | rs4234352 |
|---|---|
| Chromosome Location | chr3:78504323-78504324 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs11717713 | 0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12631698 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4342073 | 0.81[AMR][1000 genomes] |
| rs4524243 | 0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs4555484 | 0.81[AMR][1000 genomes] |
| rs4589896 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs4607071 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6548563 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6548564 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6548566 | 0.81[EUR][1000 genomes] |
| rs6548570 | 0.81[AMR][1000 genomes] |
| rs6781032 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6798454 | 0.81[AMR][1000 genomes] |
| rs6798540 | 0.81[AMR][1000 genomes] |
| rs73111886 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7614720 | 0.81[AMR][1000 genomes] |
| rs7645086 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7645553 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs9843660 | 0.81[AMR][1000 genomes] |
| rs9866490 | 1.00[ASN][1000 genomes] |
| rs9866630 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv877017 | chr3:77881397-78670654 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv529995 | chr3:78188643-78739698 | Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
| 3 | nsv1008156 | chr3:78444137-78765884 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1002258 | chr3:78481969-78532178 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv834743 | chr3:78494263-78663600 | Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:78504000-78506200 | Enhancers | Fetal Brain Male | brain |
