Variant report
Variant | rs7645553 |
---|---|
Chromosome Location | chr3:78496559-78496560 |
allele | C/G |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
No data |
No data |
No data |
No data |
No data |
rs_ID | r2[population] |
---|---|
rs11717713 | 0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes] |
rs11916084 | 0.82[AMR][1000 genomes] |
rs12631698 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4234352 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs4302345 | 0.82[AMR][1000 genomes] |
rs4342073 | 0.85[AMR][1000 genomes] |
rs4524243 | 0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
rs4555484 | 0.85[AMR][1000 genomes] |
rs4589896 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4607071 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6548563 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6548564 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6548566 | 0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes] |
rs6548570 | 0.85[AMR][1000 genomes] |
rs6781032 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6798454 | 0.85[AMR][1000 genomes] |
rs6798540 | 0.85[AMR][1000 genomes] |
rs73111886 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs7614720 | 0.85[AMR][1000 genomes] |
rs7623401 | 0.82[AMR][1000 genomes] |
rs7641163 | 0.81[AMR][1000 genomes] |
rs7645086 | 0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs9309805 | 0.83[AMR][1000 genomes] |
rs9822941 | 0.82[AMR][1000 genomes] |
rs9835912 | 0.82[AMR][1000 genomes] |
rs9843660 | 0.85[AMR][1000 genomes] |
rs9866490 | 0.98[ASN][1000 genomes] |
rs9866630 | 0.98[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv877017 | chr3:77881397-78670654 | Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 16 gene(s) | inside rSNPs | diseases |
2 | nsv529995 | chr3:78188643-78739698 | Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 11 gene(s) | inside rSNPs | diseases |
3 | nsv1008156 | chr3:78444137-78765884 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
4 | esv2757000 | chr3:78453937-78497118 | Enhancers Weak transcription ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
5 | esv2759159 | chr3:78453937-78497118 | Weak transcription Enhancers ZNF genes & repeats | n/a | n/a | inside rSNPs | diseases |
6 | nsv1006588 | chr3:78481969-78497520 | Weak transcription ZNF genes & repeats Enhancers | n/a | n/a | inside rSNPs | n/a |
7 | nsv1002258 | chr3:78481969-78532178 | Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer | n/a | n/a | inside rSNPs | diseases |
8 | nsv834743 | chr3:78494263-78663600 | Enhancers Strong transcription Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
9 | esv3396600 | chr3:78494612-78496610 | Enhancers Weak transcription | n/a | n/a | inside rSNPs | n/a |
10 | esv2763280 | chr3:78495720-78497532 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | n/a |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr3:78495800-78496600 | Enhancers | iPS-18 Cell Line | embryonic stem cell |