Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:119422857..119424567-chr7:75925278..75927867,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10934497	0.85[AMR][1000 genomes]
rs12721613	1.00[MEX][hapmap]
rs1523128	1.00[MEX][hapmap]
rs1523129	1.00[MEX][hapmap]
rs2472668	1.00[MEX][hapmap]
rs2688635	1.00[MEX][hapmap]
rs2688643	1.00[MEX][hapmap]
rs2692619	1.00[MEX][hapmap]
rs4234665	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4355316	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4411917	0.87[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4579049	1.00[AMR][1000 genomes]
rs4687878	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4687879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4687880	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4687883	1.00[MEX][hapmap]
rs4688038	1.00[MEX][hapmap]
rs6438543	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6438544	0.82[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6792664	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7624672	0.81[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7624768	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs940087	1.00[MEX][hapmap]
rs9816750	1.00[MEX][hapmap]
rs9834908	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9838456	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460834	chr3:119384163-119458851	Active TSS Strong transcription Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv591390	chr3:119384163-119458851	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv591391	chr3:119403145-119442572	Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119422200-119458200	Weak transcription	Aorta	Aorta
2	chr3:119422600-119435600	Weak transcription	Pancreas	Pancrea
3	chr3:119422800-119440000	Weak transcription	Brain Angular Gyrus	brain
4	chr3:119423000-119428400	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:119423000-119432800	Weak transcription	Brain Hippocampus Middle	brain
6	chr3:119423000-119433800	Weak transcription	Fetal Intestine Small	intestine
7	chr3:119423000-119434000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:119423000-119435000	Weak transcription	Colon Smooth Muscle	Colon
9	chr3:119423000-119463000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr3:119423000-119464400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr3:119423200-119436000	Weak transcription	Brain Anterior Caudate	brain
12	chr3:119423200-119464200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:119423200-119471600	Weak transcription	Fetal Kidney	kidney
14	chr3:119423400-119427600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:119423400-119428200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr3:119423400-119435800	Weak transcription	Ovary	ovary
17	chr3:119423400-119458200	Weak transcription	Brain Substantia Nigra	brain
18	chr3:119423800-119430600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr3:119423800-119449000	Weak transcription	Pancreatic Islets	Pancreatic Islet

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