Variant report

Variant	rs1523129
Chromosome Location	chr3:119499608-119499609
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12721613	1.00[MEX][hapmap]
rs1523128	1.00[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16830442	1.00[EUR][1000 genomes]
rs2472668	0.88[ASW][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2688635	1.00[MEX][hapmap]
rs2688643	1.00[MEX][hapmap]
rs2692619	1.00[MEX][hapmap]
rs4234663	1.00[MEX][hapmap]
rs4355316	1.00[MEX][hapmap]
rs4411917	1.00[MEX][hapmap]
rs4687883	1.00[MEX][hapmap]
rs4688036	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4688038	0.94[ASW][hapmap];1.00[GIH][hapmap];0.84[LWK][hapmap];1.00[MEX][hapmap];0.82[MKK][hapmap];0.82[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6438543	1.00[MEX][hapmap]
rs940087	1.00[MEX][hapmap]
rs954356	1.00[EUR][1000 genomes]
rs9816750	1.00[MEX][hapmap]
rs9838456	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1011178	chr3:119437192-119589116	Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv536703	chr3:119437192-119589116	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:119497800-119503000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr3:119498200-119501000	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr3:119498600-119499800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:119498800-119500000	Enhancers	HepG2	liver
5	chr3:119498800-119500400	Enhancers	Liver	Liver
6	chr3:119498800-119500600	Enhancers	Fetal Intestine Large	intestine
7	chr3:119498800-119500600	Enhancers	Fetal Intestine Small	intestine
8	chr3:119499000-119500400	Weak transcription	Spleen	Spleen
9	chr3:119499200-119500000	Enhancers	Rectal Mucosa Donor 29	rectum
10	chr3:119499200-119501800	Weak transcription	K562	blood
11	chr3:119499200-119502000	Weak transcription	HSMMtube	muscle
12	chr3:119499400-119501200	Weak transcription	HSMM	muscle
13	chr3:119499600-119500200	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr3:119499600-119501000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr3:119499600-119501600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr3:119499600-119501800	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr3:119499600-119502800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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