Variant report

Variant	rs4235401
Chromosome Location	chr4:111193141-111193142
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12647492	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13151687	0.88[EUR][1000 genomes]
rs171505	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2108406	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs244043	0.83[EUR][1000 genomes]
rs244052	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs244053	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs244057	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs244059	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2713947	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2713948	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs2713951	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs420932	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4698823	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7696992	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869392	chr4:110945459-111235071	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:111190600-111194200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:111191400-111193400	Enhancers	Osteobl	bone
3	chr4:111191600-111193400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr4:111191600-111193400	Enhancers	HSMM	muscle
5	chr4:111191800-111193400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr4:111191800-111193800	Enhancers	HSMMtube	muscle
7	chr4:111192000-111194600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr4:111192400-111194600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:111192600-111193400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr4:111192600-111197000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr4:111192800-111194200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr4:111192800-111196400	Weak transcription	NH-A	brain
13	chr4:111192800-111196800	Weak transcription	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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