Variant report

Variant	rs4236540
Chromosome Location	chr7:98769025-98769026
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98765362..98767556-chr7:98768550..98771320,2	K562	blood:
2	chr7:98766950..98769641-chr7:98774133..98776807,2	MCF-7	breast:
3	chr7:98746993..98748569-chr7:98768043..98771030,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10953280	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11975761	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12531875	1.00[CHB][hapmap];0.95[CHD][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs12532625	0.83[ASN][1000 genomes]
rs12534399	0.89[ASN][1000 genomes]
rs1807885	0.92[ASN][1000 genomes]
rs28545226	0.92[ASN][1000 genomes]
rs62472984	0.89[ASN][1000 genomes]
rs62473003	0.89[ASN][1000 genomes]
rs62473005	0.92[ASN][1000 genomes]
rs62473006	0.92[ASN][1000 genomes]
rs62473007	0.85[ASN][1000 genomes]
rs62473008	0.92[ASN][1000 genomes]
rs62473009	0.92[ASN][1000 genomes]
rs62473010	0.92[ASN][1000 genomes]
rs62473011	0.96[ASN][1000 genomes]
rs62473013	0.96[ASN][1000 genomes]
rs62473015	0.96[ASN][1000 genomes]
rs62473048	0.96[ASN][1000 genomes]
rs62473051	0.96[ASN][1000 genomes]
rs6954584	1.00[CHB][hapmap];0.95[CHD][hapmap];0.96[ASN][1000 genomes]
rs6956283	0.88[EUR][1000 genomes]
rs6958790	0.96[ASN][1000 genomes]
rs6969140	0.95[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9297145	0.95[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.81[JPT][hapmap];0.86[MEX][hapmap];0.81[MKK][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv2755119	chr7:98721885-98800145	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases
4	nsv464645	chr7:98755272-98788589	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv464646	chr7:98755272-98788589	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	nsv607925	chr7:98755272-98788589	Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98765200-98769200	Weak transcription	Stomach Mucosa	stomach
2	chr7:98767000-98770000	Enhancers	HepG2	liver
3	chr7:98767200-98769600	Enhancers	Liver	Liver
4	chr7:98768200-98769600	Enhancers	Fetal Intestine Large	intestine
5	chr7:98768800-98769200	Enhancers	Duodenum Mucosa	Duodenum
6	chr7:98768800-98769400	Weak transcription	Pancreas	Pancrea
7	chr7:98768800-98769600	Enhancers	Fetal Intestine Small	intestine

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