Variant report
Variant | rs9297145 |
---|---|
Chromosome Location | chr7:98759117-98759118 |
allele | A/C |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:6 , 50 per page) page:
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No. | Distal block | Cell Line | Cell type | Cell Stage |
---|---|---|---|---|
1 | chr7:98744404..98747208-chr7:98758596..98760579,2 | MCF-7 | breast: | |
2 | chr7:98749796..98751324-chr7:98758015..98760030,2 | MCF-7 | breast: | |
3 | chr7:98758613..98761078-chr7:98822183..98824776,3 | MCF-7 | breast: | |
4 | chr7:98758729..98762342-chr7:98808089..98809747,3 | MCF-7 | breast: | |
5 | chr7:98694291..98695902-chr7:98757331..98759613,2 | K562 | blood: | |
6 | chr7:98738735..98743436-chr7:98753010..98762849,21 | MCF-7 | breast: |
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000198742 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10953280 | 0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs11975761 | 0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes] |
rs12531875 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
rs12532625 | 0.86[ASN][1000 genomes] |
rs12534399 | 0.96[ASN][1000 genomes] |
rs1807885 | 1.00[ASN][1000 genomes] |
rs28545226 | 1.00[ASN][1000 genomes] |
rs4236540 | 0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs62472984 | 0.96[ASN][1000 genomes] |
rs62473003 | 0.96[ASN][1000 genomes] |
rs62473005 | 1.00[ASN][1000 genomes] |
rs62473006 | 1.00[ASN][1000 genomes] |
rs62473007 | 0.88[ASN][1000 genomes] |
rs62473008 | 1.00[ASN][1000 genomes] |
rs62473009 | 1.00[ASN][1000 genomes] |
rs62473010 | 1.00[ASN][1000 genomes] |
rs62473011 | 0.96[ASN][1000 genomes] |
rs62473013 | 0.96[ASN][1000 genomes] |
rs62473015 | 0.96[ASN][1000 genomes] |
rs62473048 | 0.96[ASN][1000 genomes] |
rs62473051 | 0.96[ASN][1000 genomes] |
rs6954584 | 1.00[CHB][hapmap];1.00[CHD][hapmap];0.80[GIH][hapmap];0.90[JPT][hapmap];0.96[ASN][1000 genomes] |
rs6956283 | 0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes] |
rs6958790 | 0.96[ASN][1000 genomes] |
rs6969140 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1024529 | chr7:98194830-98793518 | Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
2 | nsv539036 | chr7:98194830-98793518 | Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 30 gene(s) | inside rSNPs | diseases |
3 | esv2755119 | chr7:98721885-98800145 | Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive region | 15 gene(s) | inside rSNPs | diseases |
4 | nsv464645 | chr7:98755272-98788589 | Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
5 | nsv464646 | chr7:98755272-98788589 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
6 | nsv607925 | chr7:98755272-98788589 | Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
7 | nsv528070 | chr7:98759117-98766930 | Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
Disease | PMID | Source |
---|---|---|
Inflammatory bowel disease | 23128233 | GWAS catalog |
SNP | Gene | Cis/trans | Tissue | Source |
---|---|---|---|---|
rs9297145 | PILRB | cis | parietal | SCAN |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr7:98753000-98759800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
2 | chr7:98753800-98760000 | Weak transcription | Primary hematopoietic stem cells G-CSF-mobilized Female | -- |
3 | chr7:98758800-98760000 | Enhancers | A549 | lung |