Variant report
| Variant | rs4240740 |
|---|---|
| Chromosome Location | chr12:87734091-87734092 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:87733291..87735267-chr12:87737153..87739877,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:55)
| rs_ID | r2[population] |
|---|---|
| rs10735256 | 1.00[ASN][1000 genomes] |
| rs10735257 | 1.00[ASN][1000 genomes] |
| rs10735258 | 1.00[ASN][1000 genomes] |
| rs10745442 | 1.00[ASN][1000 genomes] |
| rs10777032 | 1.00[ASN][1000 genomes] |
| rs10777033 | 1.00[ASN][1000 genomes] |
| rs10777034 | 1.00[ASN][1000 genomes] |
| rs10777035 | 1.00[ASN][1000 genomes] |
| rs10777040 | 1.00[ASN][1000 genomes] |
| rs10777042 | 1.00[ASN][1000 genomes] |
| rs10858592 | 1.00[ASN][1000 genomes] |
| rs11104443 | 1.00[ASN][1000 genomes] |
| rs2406753 | 1.00[ASN][1000 genomes] |
| rs2406754 | 1.00[ASN][1000 genomes] |
| rs2897518 | 1.00[ASN][1000 genomes] |
| rs4147490 | 1.00[ASN][1000 genomes] |
| rs4254148 | 1.00[ASN][1000 genomes] |
| rs4269999 | 1.00[ASN][1000 genomes] |
| rs4284481 | 1.00[ASN][1000 genomes] |
| rs4300469 | 1.00[ASN][1000 genomes] |
| rs4300470 | 1.00[ASN][1000 genomes] |
| rs4326883 | 1.00[ASN][1000 genomes] |
| rs4338623 | 1.00[ASN][1000 genomes] |
| rs4402386 | 1.00[ASN][1000 genomes] |
| rs4456347 | 1.00[ASN][1000 genomes] |
| rs4460889 | 1.00[ASN][1000 genomes] |
| rs4466916 | 1.00[ASN][1000 genomes] |
| rs4502057 | 1.00[ASN][1000 genomes] |
| rs4561282 | 1.00[ASN][1000 genomes] |
| rs4564410 | 1.00[ASN][1000 genomes] |
| rs4597138 | 1.00[ASN][1000 genomes] |
| rs4625561 | 1.00[ASN][1000 genomes] |
| rs4842455 | 1.00[ASN][1000 genomes] |
| rs4842556 | 1.00[ASN][1000 genomes] |
| rs4842559 | 1.00[ASN][1000 genomes] |
| rs4842570 | 1.00[ASN][1000 genomes] |
| rs5005936 | 1.00[ASN][1000 genomes] |
| rs6538078 | 1.00[ASN][1000 genomes] |
| rs6538079 | 1.00[ASN][1000 genomes] |
| rs6538082 | 1.00[ASN][1000 genomes] |
| rs6538083 | 1.00[ASN][1000 genomes] |
| rs6538086 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6538087 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs6538088 | 1.00[JPT][hapmap];1.00[ASN][1000 genomes] |
| rs7305305 | 1.00[ASN][1000 genomes] |
| rs7310810 | 1.00[ASN][1000 genomes] |
| rs7962840 | 1.00[ASN][1000 genomes] |
| rs7970683 | 1.00[ASN][1000 genomes] |
| rs7970729 | 1.00[ASN][1000 genomes] |
| rs7970832 | 1.00[ASN][1000 genomes] |
| rs7970866 | 1.00[ASN][1000 genomes] |
| rs7971055 | 1.00[ASN][1000 genomes] |
| rs7971424 | 1.00[ASN][1000 genomes] |
| rs7974679 | 1.00[ASN][1000 genomes] |
| rs7980176 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv427918 | chr12:87647585-87786660 | Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:87731200-87741200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
