Variant report

Variant	rs4241291
Chromosome Location	chr2:191455654-191455655
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10182630	0.81[AFR][1000 genomes]
rs2028433	0.81[AFR][1000 genomes]
rs4343494	1.00[AFR][1000 genomes]
rs4519557	1.00[AFR][1000 genomes]
rs60854973	0.91[AFR][1000 genomes]
rs6751731	0.81[AFR][1000 genomes]
rs7569979	0.83[AFR][1000 genomes]
rs7571334	0.81[AFR][1000 genomes]
rs7578771	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834492	chr2:191438864-191646621	Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:191436800-191457000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:191443800-191456600	Weak transcription	Psoas Muscle	Psoas
3	chr2:191444200-191456800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr2:191448800-191461600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:191449000-191457800	Weak transcription	Hela-S3	cervix
6	chr2:191450400-191469000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr2:191450600-191456400	Weak transcription	GM12878-XiMat	blood
8	chr2:191450600-191464400	Weak transcription	Right Atrium	heart
9	chr2:191450600-191467000	Weak transcription	Brain Substantia Nigra	brain
10	chr2:191450600-191467200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr2:191451200-191457000	Weak transcription	NHDF-Ad	bronchial
12	chr2:191452200-191458000	Weak transcription	Left Ventricle	heart
13	chr2:191452800-191457400	Weak transcription	Primary hematopoietic stem cells	blood
14	chr2:191454000-191457200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr2:191454000-191457800	Weak transcription	K562	blood
16	chr2:191455000-191455800	Enhancers	Brain Hippocampus Middle	brain
17	chr2:191455000-191456800	Weak transcription	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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