Variant report

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10510544	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs11707001	0.81[YRI][hapmap]
rs11711197	0.92[YRI][hapmap];0.89[AFR][1000 genomes]
rs11712061	0.83[ASN][1000 genomes]
rs11714673	0.95[CHB][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs13066150	0.82[YRI][hapmap]
rs2043581	0.95[JPT][hapmap];0.82[ASN][1000 genomes]
rs34348685	0.81[ASN][1000 genomes]
rs4241527	1.00[CEU][hapmap];0.81[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4350869	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4563353	0.83[CHB][hapmap];0.91[JPT][hapmap]
rs4566480	0.81[CHB][hapmap];0.91[JPT][hapmap]
rs4858616	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4858617	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24458800-24490200	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:24477000-24493000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:24477200-24490400	Weak transcription	Aorta	Aorta
4	chr3:24477200-24493000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:24478200-24491400	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr3:24478400-24490000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr3:24478400-24493400	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr3:24480800-24486200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr3:24482600-24493000	Weak transcription	Right Atrium	heart
10	chr3:24482800-24488200	Weak transcription	Stomach Mucosa	stomach
11	chr3:24483000-24486000	Weak transcription	Psoas Muscle	Psoas
12	chr3:24483000-24490400	Weak transcription	Left Ventricle	heart
13	chr3:24483000-24490400	Weak transcription	Pancreas	Pancrea
14	chr3:24483000-24490400	Weak transcription	Right Ventricle	heart
15	chr3:24483200-24487200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr3:24483200-24487200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr3:24483200-24487600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr3:24483600-24487800	Weak transcription	Fetal Intestine Large	intestine
19	chr3:24483600-24487800	Weak transcription	K562	blood
20	chr3:24484000-24488800	Weak transcription	Fetal Intestine Small	intestine
21	chr3:24485000-24486200	Enhancers	Liver	Liver

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