Variant report

Variant	rs10510544
Chromosome Location	chr3:24479843-24479844
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:24479242..24483220-chr3:24534441..24537229,5	MCF-7	breast:
2	chr3:24471972..24474391-chr3:24477875..24481695,3	K562	blood:
3	chr3:24473151..24475358-chr3:24479706..24482212,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000228791	Chromatin interaction
ENSG00000151090	Chromatin interaction
ENSG00000229756	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11712061	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11714673	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13061290	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2043581	0.86[ASW][hapmap];1.00[CEU][hapmap];0.88[CHD][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.90[MKK][hapmap];0.91[TSI][hapmap];0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34348685	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35317485	0.82[ASN][1000 genomes]
rs35947386	0.82[ASN][1000 genomes]
rs4241526	0.92[ASN][1000 genomes]
rs4241527	0.90[CHD][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs4350869	0.94[ASN][1000 genomes]
rs4563353	0.86[JPT][hapmap]
rs4566480	0.86[JPT][hapmap]
rs4858616	0.85[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs4858617	0.88[CHD][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs56101205	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24458800-24490200	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:24474600-24480000	Enhancers	Fetal Intestine Small	intestine
3	chr3:24474800-24483600	Enhancers	Fetal Intestine Large	intestine
4	chr3:24475400-24480000	Weak transcription	Pancreas	Pancrea
5	chr3:24475400-24480400	Enhancers	HepG2	liver
6	chr3:24477000-24480400	Weak transcription	K562	blood
7	chr3:24477000-24493000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr3:24477200-24490400	Weak transcription	Aorta	Aorta
9	chr3:24477200-24493000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:24477400-24481800	Weak transcription	Right Atrium	heart
11	chr3:24477400-24482400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr3:24477800-24480800	Weak transcription	Placenta Amnion	Placenta Amnion
13	chr3:24478200-24480200	Weak transcription	Right Ventricle	heart
14	chr3:24478200-24482400	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr3:24478200-24491400	Weak transcription	Rectal Mucosa Donor 31	rectum
16	chr3:24478400-24490000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr3:24478400-24493400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr3:24479000-24482400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:24479400-24481400	Weak transcription	Liver	Liver
20	chr3:24479600-24480800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr3:24479800-24480200	Weak transcription	Left Ventricle	heart
22	chr3:24479800-24480200	Weak transcription	Psoas Muscle	Psoas

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