Variant report

Variant	rs56101205
Chromosome Location	chr3:24477355-24477356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24476152..24478152-chr3:24480249..24482235,2	K562	blood:
2	chr3:24476680..24478957-chr3:24482933..24484759,2	K562	blood:

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10510544	0.80[ASN][1000 genomes]
rs11714673	0.80[ASN][1000 genomes]
rs13070554	0.91[EUR][1000 genomes]
rs13077437	0.91[EUR][1000 genomes]
rs13099463	0.91[EUR][1000 genomes]
rs2196428	0.88[EUR][1000 genomes]
rs35194357	0.93[EUR][1000 genomes]
rs35317485	0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35570323	0.88[EUR][1000 genomes]
rs35947386	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4563353	0.88[ASN][1000 genomes]
rs4566480	0.87[ASN][1000 genomes]
rs4858117	0.91[EUR][1000 genomes]
rs62255443	0.88[ASN][1000 genomes]
rs6807873	0.91[EUR][1000 genomes]
rs7619134	0.91[EUR][1000 genomes]
rs9831133	0.90[EUR][1000 genomes]
rs9883790	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834640	chr3:24339779-24493605	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24458800-24490200	Weak transcription	Colon Smooth Muscle	Colon
2	chr3:24470200-24479000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr3:24472600-24478800	Weak transcription	Fetal Lung	lung
4	chr3:24474600-24480000	Enhancers	Fetal Intestine Small	intestine
5	chr3:24474800-24483600	Enhancers	Fetal Intestine Large	intestine
6	chr3:24475400-24478200	Enhancers	Skeletal Muscle Male	skeletal muscle
7	chr3:24475400-24480000	Weak transcription	Pancreas	Pancrea
8	chr3:24475400-24480400	Enhancers	HepG2	liver
9	chr3:24475800-24478400	Enhancers	Psoas Muscle	Psoas
10	chr3:24476000-24477600	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr3:24476000-24479400	Enhancers	Liver	Liver
12	chr3:24476400-24477400	Enhancers	Right Atrium	heart
13	chr3:24476400-24477600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr3:24476400-24477600	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr3:24476400-24477600	Enhancers	Right Ventricle	heart
16	chr3:24476400-24478000	Weak transcription	Duodenum Mucosa	Duodenum
17	chr3:24476600-24477400	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr3:24476600-24477400	Enhancers	Cortex derived primary cultured neurospheres	brain
19	chr3:24476600-24478400	Enhancers	Brain Germinal Matrix	brain
20	chr3:24476800-24478200	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr3:24477000-24477800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
22	chr3:24477000-24478000	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr3:24477000-24479600	Weak transcription	Left Ventricle	heart
24	chr3:24477000-24480400	Weak transcription	K562	blood
25	chr3:24477000-24493000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr3:24477200-24490400	Weak transcription	Aorta	Aorta
27	chr3:24477200-24493000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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