Variant report

Variant	rs4245537
Chromosome Location	chr6:110196403-110196404
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4557563	0.82[AFR][1000 genomes]
rs4560681	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs9400336	0.96[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019690	chr6:110102601-110360778	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110189200-110197800	Weak transcription	Fetal Kidney	kidney
2	chr6:110191400-110200800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:110191800-110199400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr6:110192000-110198600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:110192200-110197600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr6:110194200-110198600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr6:110194400-110198600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr6:110194400-110213600	Weak transcription	Right Atrium	heart
9	chr6:110194800-110197000	Weak transcription	Placenta	Placenta
10	chr6:110194800-110197000	Weak transcription	Ovary	ovary
11	chr6:110194800-110197200	Weak transcription	Monocytes-CD14+_RO01746	blood
12	chr6:110194800-110197400	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr6:110194800-110197400	Weak transcription	Spleen	Spleen
14	chr6:110195200-110197400	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr6:110195600-110198200	Weak transcription	Esophagus	oesophagus
16	chr6:110196000-110198200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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