Variant report

Variant	rs4557563
Chromosome Location	chr6:110215527-110215528
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:110213330..110215841-chr6:110359990..110362077,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs4245537	0.82[AFR][1000 genomes]
rs4499963	1.00[ASN][1000 genomes]
rs4560681	0.89[AFR][1000 genomes]
rs73527470	1.00[ASN][1000 genomes]
rs73765025	1.00[ASN][1000 genomes]
rs9400336	0.80[AFR][1000 genomes]
rs9487248	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019690	chr6:110102601-110360778	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110210600-110215600	Enhancers	Placenta	Placenta
2	chr6:110211800-110218400	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr6:110212400-110216800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr6:110212800-110215600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:110212800-110218800	Enhancers	Primary B cells from peripheral blood	blood
6	chr6:110213000-110216400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr6:110214400-110215600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
8	chr6:110214800-110215600	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
9	chr6:110214800-110215600	Enhancers	Esophagus	oesophagus
10	chr6:110214800-110215800	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr6:110214800-110215800	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
12	chr6:110214800-110216800	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
13	chr6:110214800-110216800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
14	chr6:110215000-110215600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr6:110215000-110215600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr6:110215200-110218800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:110215400-110215600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr6:110215400-110216400	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr6:110215400-110217600	Weak transcription	Brain Hippocampus Middle	brain
20	chr6:110215400-110217800	Weak transcription	Stomach Mucosa	stomach

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