Variant report

Variant	rs4499963
Chromosome Location	chr6:110221066-110221067
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4557563	1.00[ASN][1000 genomes]
rs73527470	1.00[ASN][1000 genomes]
rs73765025	1.00[ASN][1000 genomes]
rs9487248	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019690	chr6:110102601-110360778	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110215600-110222200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:110216800-110222400	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr6:110218400-110222600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr6:110218600-110222200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr6:110218600-110222600	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:110219200-110223600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:110219400-110222400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:110219800-110222400	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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