Variant report

Variant	rs9487248
Chromosome Location	chr6:110212313-110212314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs28885742	0.89[AMR][1000 genomes]
rs4499963	1.00[ASN][1000 genomes]
rs4557563	1.00[ASN][1000 genomes]
rs73527470	1.00[ASN][1000 genomes]
rs73765025	1.00[ASN][1000 genomes]
rs9487246	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs9487249	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019690	chr6:110102601-110360778	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110194400-110213600	Weak transcription	Right Atrium	heart
2	chr6:110206600-110213400	Weak transcription	Pancreas	Pancrea
3	chr6:110210600-110215600	Enhancers	Placenta	Placenta
4	chr6:110211600-110213200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr6:110211800-110213800	Weak transcription	NHEK	skin
6	chr6:110211800-110218400	Enhancers	Primary monocytes fromperipheralblood	blood
7	chr6:110212000-110212400	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr6:110212000-110213000	Enhancers	Primary neutrophils fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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