Variant report

Variant	rs4252151
Chromosome Location	chr6:161159016-161159017
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MYC	chr6:161158987-161159286	MCF10A-Er-Src	breast:	n/a	chr6:161159128-161159137
2	STAT3	chr6:161158950-161159243	MCF10A-Er-Src	breast:	n/a	chr6:161159129-161159138
3	FOS	chr6:161158898-161159345	MCF10A-Er-Src	breast:	n/a	chr6:161159125-161159136 chr6:161159129-161159138 chr6:161159128-161159139
4	FOSL1	chr6:161158907-161159448	HCT-116	colon:	n/a	chr6:161159125-161159136 chr6:161159129-161159138 chr6:161159128-161159139
5	FOS	chr6:161158913-161159331	MCF10A-Er-Src	breast:	n/a	chr6:161159125-161159136 chr6:161159129-161159138 chr6:161159128-161159139
6	FOS	chr6:161158964-161159317	MCF10A-Er-Src	breast:	n/a	chr6:161159125-161159136 chr6:161159129-161159138 chr6:161159128-161159139
7	MYC	chr6:161158990-161159298	MCF10A-Er-Src	breast:	n/a	chr6:161159128-161159137
8	STAT3	chr6:161158984-161159300	MCF10A-Er-Src	breast:	n/a	chr6:161159129-161159138
9	JUND	chr6:161158995-161159319	HepG2	liver:	n/a	chr6:161159125-161159136 chr6:161159129-161159138 chr6:161159127-161159138 chr6:161159128-161159139 chr6:161159169-161159180
10	STAT3	chr6:161158984-161159252	MCF10A-Er-Src	breast:	n/a	chr6:161159129-161159138
11	FOS	chr6:161158953-161159339	MCF10A-Er-Src	breast:	n/a	chr6:161159125-161159136 chr6:161159129-161159138 chr6:161159128-161159139
12	JUND	chr6:161158910-161159392	HCT-116	colon:	n/a	chr6:161159125-161159136 chr6:161159129-161159138 chr6:161159127-161159138 chr6:161159128-161159139 chr6:161159169-161159180

Variant related genes	Relation type
PLG	TF binding region

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1321197	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13231	0.91[EUR][1000 genomes]
rs1853016	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1853017	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1853018	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1897108	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28402939	0.87[EUR][1000 genomes]
rs35513104	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4252066	0.91[EUR][1000 genomes]
rs4252072	0.93[EUR][1000 genomes]
rs4252076	0.93[EUR][1000 genomes]
rs4252078	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4252082	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4252086	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4252087	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4252090	0.92[EUR][1000 genomes]
rs4252093	0.92[EUR][1000 genomes]
rs4252096	0.91[EUR][1000 genomes]
rs4252107	0.91[EUR][1000 genomes]
rs4252109	0.91[EUR][1000 genomes]
rs4252114	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4252117	0.92[EUR][1000 genomes]
rs4252120	0.92[EUR][1000 genomes]
rs4252125	0.95[EUR][1000 genomes]
rs4252126	0.95[EUR][1000 genomes]
rs4252130	0.95[EUR][1000 genomes]
rs4252134	0.95[EUR][1000 genomes]
rs4252135	0.95[EUR][1000 genomes]
rs4252147	0.96[YRI][hapmap]
rs4252165	0.95[EUR][1000 genomes]
rs56093624	0.95[EUR][1000 genomes]
rs59614420	0.92[EUR][1000 genomes]
rs62439804	0.91[EUR][1000 genomes]
rs62439805	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9456578	0.92[EUR][1000 genomes]
rs9458012	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9458016	0.92[EUR][1000 genomes]
rs9458017	0.95[EUR][1000 genomes]
rs9458019	0.95[EUR][1000 genomes]
rs9458020	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1019113	chr6:161127584-161197558	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv522773	chr6:161152449-161170835	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161140800-161175200	Strong transcription	Liver	Liver
2	chr6:161158600-161159600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:161158600-161159800	ZNF genes & repeats	GM12878-XiMat	blood
4	chr6:161158800-161159200	Enhancers	HMEC	breast

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