Variant report

Variant	rs4252152
Chromosome Location	chr6:161159366-161159367
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL1	chr6:161158907-161159448	HCT-116	colon:	n/a	chr6:161159125-161159136 chr6:161159129-161159138 chr6:161159128-161159139
2	POLR2A	chr6:161159067-161159387	HepG2	liver:	n/a	n/a
3	JUND	chr6:161158910-161159392	HCT-116	colon:	n/a	chr6:161159125-161159136 chr6:161159129-161159138 chr6:161159127-161159138 chr6:161159128-161159139 chr6:161159169-161159180

Variant related genes	Relation type
PLG	TF binding region

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10945688	0.87[EUR][1000 genomes]
rs1317026	1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs1321198	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1321199	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1321200	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1853025	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1897107	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1897109	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4252097	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4252106	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4252116	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4252121	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4252122	1.00[CEU][hapmap]
rs4252145	1.00[CEU][hapmap]
rs4252155	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58184095	0.80[AMR][1000 genomes]
rs720886	1.00[CEU][hapmap];0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784939	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784941	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73784942	0.89[EUR][1000 genomes]
rs73784943	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1019113	chr6:161127584-161197558	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv522773	chr6:161152449-161170835	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161140800-161175200	Strong transcription	Liver	Liver
2	chr6:161158600-161159600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:161158600-161159800	ZNF genes & repeats	GM12878-XiMat	blood
4	chr6:161159200-161159400	Enhancers	NHEK	skin

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