Variant report

Variant	rs4252153
Chromosome Location	chr6:161159423-161159424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOSL1	chr6:161158907-161159448	HCT-116	colon:	n/a	chr6:161159125-161159136 chr6:161159129-161159138 chr6:161159128-161159139

Variant related genes	Relation type
PLG	TF binding region

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs41264294	1.00[AMR][1000 genomes]
rs41269854	1.00[AMR][1000 genomes]
rs41269884	1.00[AMR][1000 genomes]
rs41269896	1.00[AMR][1000 genomes]
rs41270984	1.00[AMR][1000 genomes]
rs41271000	1.00[AMR][1000 genomes]
rs41272054	1.00[AMR][1000 genomes]
rs59653355	1.00[AMR][1000 genomes]
rs59760174	1.00[AMR][1000 genomes]
rs60321597	1.00[AMR][1000 genomes]
rs6930542	1.00[AMR][1000 genomes]
rs73594879	1.00[AMR][1000 genomes]
rs73594888	1.00[AMR][1000 genomes]
rs73594901	1.00[AMR][1000 genomes]
rs73596849	1.00[AMR][1000 genomes]
rs7769523	1.00[AMR][1000 genomes]
rs9456567	1.00[AMR][1000 genomes]
rs9457949	1.00[AMR][1000 genomes]
rs9457951	1.00[AMR][1000 genomes]
rs9457952	1.00[AMR][1000 genomes]
rs9457954	1.00[AMR][1000 genomes]
rs9457986	1.00[AMR][1000 genomes]
rs9457988	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758089	chr6:160372244-161234665	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2759484	chr6:160372244-161234665	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv1019113	chr6:161127584-161197558	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv522773	chr6:161152449-161170835	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161140800-161175200	Strong transcription	Liver	Liver
2	chr6:161158600-161159600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr6:161158600-161159800	ZNF genes & repeats	GM12878-XiMat	blood

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