Variant report

Variant	rs4256446
Chromosome Location	chr6:141785983-141785984
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:141781801..141783387-chr6:141785165..141786989,2	K562	blood:
2	chr6:141783152..141786051-chr6:141790020..141792885,2	MCF-7	breast:

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1572606	0.81[AMR][1000 genomes]
rs2225906	0.81[AMR][1000 genomes]
rs4410752	0.83[AMR][1000 genomes]
rs4526215	0.81[AMR][1000 genomes]
rs4576273	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4601142	0.83[AMR][1000 genomes]
rs6570462	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6570464	0.81[AMR][1000 genomes]
rs6903713	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6919390	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs6930558	0.81[AMR][1000 genomes]
rs6932924	0.83[AMR][1000 genomes]
rs6934396	0.81[AMR][1000 genomes]
rs7740172	0.82[AMR][1000 genomes]
rs9399373	0.81[AMR][1000 genomes]
rs9403313	0.81[AMR][1000 genomes]
rs9403319	0.81[AMR][1000 genomes]
rs9496055	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019459	chr6:141051249-141862727	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538453	chr6:141051249-141862727	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532070	chr6:141057326-141865359	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025922	chr6:141090901-141865360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538454	chr6:141090901-141865360	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv886727	chr6:141610933-141793547	ZNF genes & repeats Enhancers Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
10	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141781800-141788000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:141782800-141788000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:141782800-141790600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr6:141782800-141791400	Weak transcription	H1 Cell Line	embryonic stem cell
5	chr6:141784000-141788000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr6:141784000-141788400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr6:141784400-141786000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:141784400-141786000	Enhancers	Dnd41	blood
9	chr6:141784400-141786600	Enhancers	HSMM	muscle
10	chr6:141784400-141786600	Enhancers	Osteobl	bone
11	chr6:141784600-141786800	Enhancers	HSMMtube	muscle
12	chr6:141784600-141787400	Weak transcription	Left Ventricle	heart
13	chr6:141784800-141786200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr6:141784800-141786200	Enhancers	Pancreatic Islets	Pancreatic Islet
15	chr6:141784800-141786400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr6:141784800-141786400	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr6:141785000-141786000	Enhancers	Primary B cells from peripheral blood	blood
18	chr6:141785000-141786000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
19	chr6:141785000-141786000	Enhancers	Adipose Nuclei	Adipose
20	chr6:141785000-141786400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr6:141785000-141787600	Weak transcription	Right Atrium	heart
22	chr6:141785000-141789200	Weak transcription	Aorta	Aorta
23	chr6:141785200-141786400	Enhancers	Muscle Satellite Cultured Cells	--
24	chr6:141785200-141786400	Enhancers	NHDF-Ad	bronchial
25	chr6:141785200-141787600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr6:141785400-141786000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr6:141785400-141786000	Enhancers	Fetal Heart	heart
28	chr6:141785400-141786400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr6:141785400-141786600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr6:141785400-141786800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr6:141785400-141787800	Weak transcription	Placenta Amnion	Placenta Amnion
32	chr6:141785400-141788600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:141785600-141786000	Enhancers	Duodenum Smooth Muscle	Duodenum
34	chr6:141785600-141786000	Enhancers	NHLF	lung
35	chr6:141785600-141786200	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr6:141785600-141786200	Enhancers	Cortex derived primary cultured neurospheres	brain
37	chr6:141785600-141786200	Enhancers	Fetal Brain Female	brain
38	chr6:141785600-141786400	Enhancers	Fetal Brain Male	brain
39	chr6:141785600-141786600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr6:141785800-141786000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr6:141785800-141786000	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr6:141785800-141786200	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr6:141785800-141786400	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr6:141785800-141786400	Enhancers	GM12878-XiMat	blood

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