Variant report

Variant	rs6570462
Chromosome Location	chr6:141804747-141804748
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1572606	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2225906	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4256446	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4410752	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs4526215	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4576273	0.89[AFR][1000 genomes];0.99[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4601142	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6570464	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6903713	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6919390	0.92[AFR][1000 genomes];0.88[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs6930558	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6932924	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6934396	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7740172	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7760420	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9399373	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9403313	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9403319	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9496055	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1019459	chr6:141051249-141862727	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv538453	chr6:141051249-141862727	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv532070	chr6:141057326-141865359	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1025922	chr6:141090901-141865360	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv538454	chr6:141090901-141865360	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv1029550	chr6:141372610-142029669	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
7	nsv1015835	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv538455	chr6:141713451-142233317	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	esv2755719	chr6:141721907-142123546	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:141803800-141804800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr6:141803800-141805000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
3	chr6:141803800-141805000	Active TSS	Fetal Muscle Leg	muscle
4	chr6:141803800-141805200	Active TSS	Primary T cells fromperipheralblood	blood
5	chr6:141803800-141805200	Active TSS	Brain Inferior Temporal Lobe	brain
6	chr6:141803800-141805200	Active TSS	NHLF	lung
7	chr6:141803800-141805400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
8	chr6:141803800-141805400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr6:141803800-141806000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:141803800-141806000	Flanking Active TSS	Dnd41	blood
11	chr6:141803800-141806200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:141803800-141806200	Active TSS	Right Atrium	heart
13	chr6:141804000-141804800	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
14	chr6:141804000-141804800	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr6:141804000-141804800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
16	chr6:141804000-141804800	Active TSS	Primary mononuclear cells fromperipheralblood	Blood
17	chr6:141804000-141804800	Active TSS	Fetal Brain Male	brain
18	chr6:141804000-141805000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr6:141804000-141805000	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr6:141804000-141805000	Active TSS	Brain Angular Gyrus	brain
21	chr6:141804000-141805000	Active TSS	Brain Substantia Nigra	brain
22	chr6:141804000-141805000	Active TSS	Colonic Mucosa	Colon
23	chr6:141804000-141805000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
24	chr6:141804000-141805000	Active TSS	Rectal Smooth Muscle	rectum
25	chr6:141804000-141805200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
26	chr6:141804000-141805200	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:141804000-141805200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:141804000-141805200	Active TSS	Aorta	Aorta
29	chr6:141804000-141805200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr6:141804000-141805200	Active TSS	Duodenum Smooth Muscle	Duodenum
31	chr6:141804000-141805200	Active TSS	Fetal Lung	lung
32	chr6:141804000-141805200	Active TSS	Fetal Muscle Trunk	muscle
33	chr6:141804000-141805200	Active TSS	Rectal Mucosa Donor 29	rectum
34	chr6:141804000-141805200	Active TSS	Skeletal Muscle Female	skeletal muscle
35	chr6:141804000-141805400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
36	chr6:141804000-141805400	Active TSS	A549	lung
37	chr6:141804000-141805400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
38	chr6:141804000-141806200	Enhancers	Fetal Thymus	thymus
39	chr6:141804200-141805200	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr6:141804200-141805200	Flanking Active TSS	Primary hematopoietic stem cells	blood
41	chr6:141804200-141805200	Active TSS	Psoas Muscle	Psoas
42	chr6:141804200-141805200	Active TSS	Stomach Smooth Muscle	stomach
43	chr6:141804200-141805200	Flanking Active TSS	NH-A	brain
44	chr6:141804200-141805400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
45	chr6:141804200-141805400	Flanking Active TSS	Adipose Nuclei	Adipose
46	chr6:141804400-141804800	Enhancers	NHEK	skin
47	chr6:141804400-141805000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr6:141804400-141805000	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
49	chr6:141804400-141805000	Enhancers	Brain Germinal Matrix	brain
50	chr6:141804400-141805000	Active TSS	Thymus	Thymus

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