Variant report

Variant	rs4261482
Chromosome Location	chr15:74200432-74200433
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:74166966..74167835-chr15:74200363..74201284,2	K562	blood:
2	chr15:74189543..74190278-chr15:74200191..74201004,2	MCF-7	breast:
3	chr15:74165469..74166909-chr15:74200259..74201272,12	MCF-7	breast:
4	chr15:74004213..74004741-chr15:74200125..74201228,3	MCF-7	breast:
5	chr15:74165493..74166290-chr15:74200177..74201023,2	MCF-7	breast:
6	chr15:74189893..74190719-chr15:74200185..74200692,2	K562	blood:
7	chr15:74165546..74166938-chr15:74200068..74201286,6	K562	blood:
8	chr15:74191166..74196987-chr15:74197125..74201109,6	MCF-7	breast:
9	chr15:74188905..74190567-chr15:74198222..74201864,3	MCF-7	breast:
10	chr15:74200291..74201090-chr15:74219786..74220535,2	MCF-7	breast:
11	chr15:74164684..74166612-chr15:74199280..74201018,2	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-STOML1-1	chr15:74200424-74200889	ENSG00000261801.1

No data

Variant related genes	Relation type
ENSG00000260624	Chromatin interaction
ENSG00000261801	Chromatin interaction
ENSG00000167139	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs12148538	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12438872	1.00[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12440507	1.00[CHB][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs12915956	0.95[CHB][hapmap];0.95[JPT][hapmap];0.84[ASN][1000 genomes]
rs12916069	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2278864	0.84[ASN][1000 genomes]
rs34894704	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34911689	0.89[ASN][1000 genomes]
rs35051165	0.89[ASN][1000 genomes]
rs35394512	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4369609	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4533234	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4625681	0.89[ASN][1000 genomes]
rs4886725	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs7496005	0.84[CHB][hapmap];0.95[JPT][hapmap]
rs896590	1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
2	nsv1603	chr15:74191222-74235733	Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74188800-74204000	Weak transcription	Right Atrium	heart
2	chr15:74190000-74203400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr15:74191800-74203600	Weak transcription	Primary T cells from cord blood	blood
4	chr15:74192200-74203400	Weak transcription	Aorta	Aorta
5	chr15:74192600-74207400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr15:74192600-74214000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
7	chr15:74193400-74200600	Weak transcription	Fetal Brain Female	brain
8	chr15:74195400-74203000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:74195800-74210200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:74197000-74208600	Weak transcription	Thymus	Thymus
11	chr15:74197200-74200600	Weak transcription	Fetal Brain Male	brain
12	chr15:74198200-74206600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr15:74198200-74215200	Weak transcription	Pancreas	Pancrea
14	chr15:74198400-74200800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr15:74198400-74201800	Weak transcription	Fetal Stomach	stomach
16	chr15:74198600-74200800	Enhancers	Primary hematopoietic stem cells short term culture	blood
17	chr15:74198600-74200800	Enhancers	HSMMtube	muscle
18	chr15:74198600-74200800	Enhancers	NHDF-Ad	bronchial
19	chr15:74198800-74200600	Enhancers	HSMM	muscle
20	chr15:74198800-74200800	Enhancers	Primary monocytes fromperipheralblood	blood
21	chr15:74198800-74201000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr15:74199000-74200800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr15:74199200-74200800	Enhancers	Fetal Muscle Leg	muscle
24	chr15:74199200-74216200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr15:74199400-74200600	Enhancers	Fetal Heart	heart
26	chr15:74199600-74200600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr15:74199600-74203000	Weak transcription	Left Ventricle	heart
28	chr15:74199600-74204000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:74199600-74208600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr15:74199800-74201200	Strong transcription	Muscle Satellite Cultured Cells	--
31	chr15:74199800-74208600	Weak transcription	NHLF	lung
32	chr15:74199800-74211200	Weak transcription	NH-A	brain
33	chr15:74199800-74211400	Weak transcription	Osteobl	bone
34	chr15:74199800-74213800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr15:74200000-74208200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr15:74200000-74210200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr15:74200400-74200800	Enhancers	H1 Cell Line	embryonic stem cell
38	chr15:74200400-74200800	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr15:74200400-74200800	Enhancers	Cortex derived primary cultured neurospheres	brain
40	chr15:74200400-74200800	Enhancers	Adipose Nuclei	Adipose
41	chr15:74200400-74200800	Enhancers	Duodenum Mucosa	Duodenum
42	chr15:74200400-74200800	Enhancers	Stomach Mucosa	stomach
43	chr15:74200400-74201000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr15:74200400-74201000	Enhancers	Stomach Smooth Muscle	stomach
45	chr15:74200400-74205800	Weak transcription	Primary hematopoietic stem cells	blood
46	chr15:74200400-74208600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood

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