Variant report

Variant	rs34911689
Chromosome Location	chr15:74186759-74186760
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12148538	0.90[ASN][1000 genomes]
rs12438872	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12440507	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12915956	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12916069	0.98[ASN][1000 genomes]
rs2278864	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2290345	0.83[ASN][1000 genomes]
rs34894704	0.89[ASN][1000 genomes]
rs35051165	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35394512	0.83[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs4243035	0.81[ASN][1000 genomes]
rs4261482	0.89[ASN][1000 genomes]
rs4369609	0.86[ASN][1000 genomes]
rs4533234	0.89[ASN][1000 genomes]
rs4625681	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4886725	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs744618	0.83[ASN][1000 genomes]
rs7496005	0.86[ASN][1000 genomes]
rs896590	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74185200-74187000	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:74185400-74186800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:74186000-74188600	Enhancers	Brain Germinal Matrix	brain
4	chr15:74186200-74188600	Enhancers	Duodenum Mucosa	Duodenum
5	chr15:74186600-74186800	Enhancers	H1 Cell Line	embryonic stem cell
6	chr15:74186600-74188400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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