Variant report

Variant	rs4243035
Chromosome Location	chr15:74160766-74160767
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12438872	0.84[ASN][1000 genomes]
rs12438959	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12440507	0.81[ASN][1000 genomes]
rs12442246	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12591598	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12915956	0.84[ASN][1000 genomes]
rs2278864	0.84[ASN][1000 genomes]
rs2290345	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34911689	0.81[ASN][1000 genomes]
rs35051165	0.81[ASN][1000 genomes]
rs4577028	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4625681	0.81[ASN][1000 genomes]
rs4886725	0.92[ASN][1000 genomes]
rs7178188	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs744618	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7496005	0.92[ASN][1000 genomes]
rs896590	0.84[ASN][1000 genomes]
rs921541	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9806513	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74154800-74167000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:74158600-74164600	Enhancers	Right Atrium	heart
3	chr15:74158800-74161400	Enhancers	H1 Cell Line	embryonic stem cell
4	chr15:74159000-74161400	Enhancers	Ovary	ovary
5	chr15:74159400-74161000	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr15:74159600-74161600	Weak transcription	Right Ventricle	heart
7	chr15:74159800-74162600	Weak transcription	Fetal Intestine Small	intestine
8	chr15:74160000-74163400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr15:74160200-74160800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr15:74160400-74161800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr15:74160600-74161600	Weak transcription	Left Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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