Variant report

Variant	rs12442246
Chromosome Location	chr15:74157314-74157315
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12438959	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12591598	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2290345	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4243035	0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4577028	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4886725	0.87[ASN][1000 genomes]
rs7178188	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs744618	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7496005	0.87[ASN][1000 genomes]
rs921541	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9806513	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043335	chr15:74078689-74241186	Weak transcription Flanking Active TSS Strong transcription Enhancers Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74149600-74158600	Weak transcription	Right Atrium	heart
2	chr15:74152000-74158400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:74154800-74167000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:74155000-74158000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr15:74155000-74158200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr15:74155000-74159000	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr15:74155000-74159000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr15:74155000-74159000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr15:74155000-74159400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
10	chr15:74155000-74159600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr15:74155200-74159000	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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