Variant report

Variant	rs4261489
Chromosome Location	chr15:31690722-31690723
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:31666607..31669484-chr15:31689062..31691079,2	MCF-7	breast:
2	chr15:31656683..31658264-chr15:31690319..31692680,2	K562	blood:
3	chr15:31619402..31621251-chr15:31688977..31690973,2	MCF-7	breast:
4	chr15:31684315..31687013-chr15:31687874..31690870,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169926	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10047980	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10851546	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11071016	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4328401	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4354896	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4389106	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4586393	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4779873	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4779874	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62037901	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6493635	1.00[CHB][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6493639	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6493659	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7165145	0.98[EUR][1000 genomes]
rs7171213	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7174005	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7175258	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7182014	0.85[EUR][1000 genomes]
rs7402619	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	esv1815415	chr15:31483843-31697213	Genic enhancers Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
7	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
8	nsv903841	chr15:31616674-31697242	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
9	nsv903842	chr15:31621321-31697242	Weak transcription Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv456748	chr15:31621321-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
11	nsv568801	chr15:31621321-31697642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
12	esv1810782	chr15:31633161-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
13	nsv903843	chr15:31672947-31723279	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31685800-31694000	Weak transcription	Aorta	Aorta
2	chr15:31686000-31696200	Weak transcription	Gastric	stomach
3	chr15:31688000-31691400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr15:31688000-31692600	Enhancers	Placenta	Placenta
5	chr15:31688800-31691000	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr15:31688800-31691200	Enhancers	Muscle Satellite Cultured Cells	--
7	chr15:31688800-31691400	Enhancers	Fetal Heart	heart
8	chr15:31688800-31692200	Enhancers	Rectal Mucosa Donor 31	rectum
9	chr15:31688800-31692600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr15:31688800-31692800	Enhancers	HMEC	breast
11	chr15:31688800-31693200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr15:31688800-31693400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:31688800-31693400	Enhancers	NHDF-Ad	bronchial
14	chr15:31688800-31695200	Enhancers	Osteobl	bone
15	chr15:31689000-31690800	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr15:31689000-31691400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr15:31689000-31691400	Enhancers	Fetal Intestine Large	intestine
18	chr15:31689000-31691400	Enhancers	Fetal Intestine Small	intestine
19	chr15:31689000-31691800	Enhancers	Lung	lung
20	chr15:31689000-31692000	Enhancers	Stomach Mucosa	stomach
21	chr15:31689000-31692200	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr15:31689000-31693400	Enhancers	NHLF	lung
23	chr15:31689200-31691200	Enhancers	Fetal Muscle Trunk	muscle
24	chr15:31689200-31691400	Enhancers	Fetal Muscle Leg	muscle
25	chr15:31689200-31692000	Enhancers	Left Ventricle	heart
26	chr15:31689200-31692400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:31689600-31690800	Flanking Active TSS	NHEK	skin
28	chr15:31689600-31691000	Enhancers	H1 Cell Line	embryonic stem cell
29	chr15:31689600-31691000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr15:31689600-31691000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr15:31689600-31691000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:31689600-31691000	Enhancers	NH-A	brain
33	chr15:31689600-31691200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr15:31689600-31691200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:31689600-31691200	Enhancers	Primary T cells from cord blood	blood
36	chr15:31689600-31691200	Enhancers	Brain Cingulate Gyrus	brain
37	chr15:31689600-31691200	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
38	chr15:31689600-31691400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:31689600-31691400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
40	chr15:31689600-31691400	Enhancers	Psoas Muscle	Psoas
41	chr15:31689600-31691400	Flanking Active TSS	Hela-S3	cervix
42	chr15:31689600-31692000	Enhancers	Right Ventricle	heart
43	chr15:31689600-31692000	Enhancers	Spleen	Spleen
44	chr15:31689600-31692200	Enhancers	Colonic Mucosa	Colon
45	chr15:31689600-31692200	Enhancers	Right Atrium	heart
46	chr15:31689600-31692200	Enhancers	HSMMtube	muscle
47	chr15:31689600-31692400	Enhancers	Breast Myoepithelial Primary Cells	Breast
48	chr15:31689600-31692400	Enhancers	Primary T cells fromperipheralblood	blood
49	chr15:31689600-31692600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
50	chr15:31689600-31692600	Enhancers	GM12878-XiMat	blood

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