Variant report

Variant	rs7175258
Chromosome Location	chr15:31697642-31697643
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-FAN1-2	chr15:31695631-31697700	NONHSAT041455
2	lnc-FAN1-2	chr15:31695631-31697700	NONHSAT041456

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10047980	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10851546	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11071016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4261489	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4328401	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4354896	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4389106	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4586393	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4779873	1.00[ASW][hapmap];1.00[CEU][hapmap];0.89[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4779874	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs62037901	0.95[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6493635	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6493639	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6493659	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7165145	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7171213	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7174005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7182014	0.86[EUR][1000 genomes]
rs7402619	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903831	chr15:30986051-31723279	Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	84 gene(s)	inside rSNPs	diseases
2	nsv1054147	chr15:31014507-31972706	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
3	nsv542306	chr15:31014507-31972706	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
4	nsv932896	chr15:31292475-31730445	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	59 gene(s)	inside rSNPs	diseases
5	esv34100	chr15:31496514-31792591	Active TSS Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
6	nsv903840	chr15:31589970-31800149	Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	nsv456748	chr15:31621321-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
8	nsv568801	chr15:31621321-31697642	Weak transcription Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
9	esv1810782	chr15:31633161-31697642	Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
10	nsv903843	chr15:31672947-31723279	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:31689600-31699000	Enhancers	Fetal Thymus	thymus
2	chr15:31691400-31699400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:31693200-31698800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:31693600-31698000	Enhancers	Lung	lung
5	chr15:31694800-31698800	Enhancers	Dnd41	blood
6	chr15:31695200-31698800	Enhancers	Hela-S3	cervix
7	chr15:31696200-31698400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
8	chr15:31696400-31697800	Weak transcription	NH-A	brain
9	chr15:31696400-31700600	Enhancers	Primary B cells from cord blood	blood
10	chr15:31696400-31704200	Weak transcription	HMEC	breast
11	chr15:31696600-31704200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:31696800-31698000	Enhancers	Primary T helper cells fromperipheralblood	blood
13	chr15:31696800-31698200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr15:31696800-31698200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr15:31697000-31698200	Enhancers	Primary T cells from cord blood	blood
16	chr15:31697000-31698800	Enhancers	Primary B cells from peripheral blood	blood
17	chr15:31697000-31698800	Enhancers	Primary T cells fromperipheralblood	blood
18	chr15:31697200-31698000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
19	chr15:31697200-31698000	Enhancers	Gastric	stomach
20	chr15:31697200-31698000	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr15:31697200-31698000	Enhancers	Thymus	Thymus
22	chr15:31697200-31698200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr15:31697200-31698200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr15:31697200-31698200	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr15:31697200-31698400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr15:31697400-31698000	Enhancers	Small Intestine	intestine
27	chr15:31697400-31698200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:31697400-31698200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr15:31697400-31698200	Enhancers	NHEK	skin
30	chr15:31697400-31698600	Enhancers	HUVEC	blood vessel
31	chr15:31697400-31699200	Enhancers	HepG2	liver
32	chr15:31697600-31697800	Enhancers	NHLF	lung
33	chr15:31697600-31698000	Enhancers	Primary T helper naive cells from peripheral blood	blood
34	chr15:31697600-31698000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr15:31697600-31698000	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr15:31697600-31698200	Enhancers	Primary T killer memory cells from peripheral blood	blood
37	chr15:31697600-31699600	Enhancers	Stomach Mucosa	stomach

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