Variant report

Variant	rs426158
Chromosome Location	chr6:6199915-6199916
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10484323	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs12333289	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs17141966	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs2765236	1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3024367	1.00[CHB][hapmap]
rs3024371	1.00[CHB][hapmap]
rs34421073	1.00[ASN][1000 genomes]
rs373695	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9328347	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9502428	1.00[ASN][1000 genomes]
rs9504737	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9504738	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs9504739	1.00[ASN][1000 genomes]
rs9504740	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv883421	chr6:6163492-6574384	Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
2	nsv883422	chr6:6163492-6769930	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6146800-6200400	Weak transcription	Placenta	Placenta
2	chr6:6196000-6218200	Weak transcription	HSMM	muscle
3	chr6:6196600-6201000	Weak transcription	HSMMtube	muscle
4	chr6:6197000-6200600	Weak transcription	Adipose Nuclei	Adipose
5	chr6:6199000-6205000	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr6:6199200-6200800	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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