Variant report
| Variant | rs426171 |
|---|---|
| Chromosome Location | chr13:110557648-110557649 |
| allele | G/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:53)
| rs_ID | r2[population] |
|---|---|
| rs1556574 | 0.99[ASN][1000 genomes] |
| rs1760599 | 0.99[ASN][1000 genomes] |
| rs1763034 | 0.99[ASN][1000 genomes] |
| rs1763035 | 0.99[ASN][1000 genomes] |
| rs1763036 | 0.99[ASN][1000 genomes] |
| rs1763037 | 0.99[ASN][1000 genomes] |
| rs1763038 | 0.99[ASN][1000 genomes] |
| rs1855440 | 0.81[ASN][1000 genomes] |
| rs1932416 | 0.99[ASN][1000 genomes] |
| rs1953173 | 0.97[ASN][1000 genomes] |
| rs336205 | 0.99[ASN][1000 genomes] |
| rs336206 | 0.98[ASN][1000 genomes] |
| rs336207 | 0.99[ASN][1000 genomes] |
| rs336208 | 0.99[ASN][1000 genomes] |
| rs367400 | 0.99[ASN][1000 genomes] |
| rs371316 | 1.00[ASN][1000 genomes] |
| rs373872 | 0.99[ASN][1000 genomes] |
| rs378035 | 1.00[ASN][1000 genomes] |
| rs379193 | 0.99[ASN][1000 genomes] |
| rs384608 | 0.99[ASN][1000 genomes] |
| rs387811 | 0.97[ASN][1000 genomes] |
| rs392244 | 0.99[ASN][1000 genomes] |
| rs412905 | 0.97[ASN][1000 genomes] |
| rs415512 | 1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs416090 | 0.99[ASN][1000 genomes] |
| rs424480 | 0.99[ASN][1000 genomes] |
| rs426839 | 0.99[ASN][1000 genomes] |
| rs431199 | 0.97[ASN][1000 genomes] |
| rs434999 | 0.99[ASN][1000 genomes] |
| rs444409 | 0.99[ASN][1000 genomes] |
| rs56183751 | 0.99[ASN][1000 genomes] |
| rs6492232 | 0.81[ASN][1000 genomes] |
| rs66895129 | 0.97[ASN][1000 genomes] |
| rs693404 | 0.99[ASN][1000 genomes] |
| rs7491948 | 0.99[ASN][1000 genomes] |
| rs7491951 | 0.98[ASN][1000 genomes] |
| rs7994830 | 0.99[ASN][1000 genomes] |
| rs7995631 | 0.99[ASN][1000 genomes] |
| rs8000780 | 0.99[ASN][1000 genomes] |
| rs8001698 | 0.99[ASN][1000 genomes] |
| rs9555644 | 0.91[ASN][1000 genomes] |
| rs9555645 | 0.99[ASN][1000 genomes] |
| rs9555646 | 0.99[ASN][1000 genomes] |
| rs9555647 | 0.99[ASN][1000 genomes] |
| rs9559671 | 0.99[ASN][1000 genomes] |
| rs9559675 | 0.84[ASN][1000 genomes] |
| rs9634471 | 0.99[ASN][1000 genomes] |
| rs9634472 | 0.99[ASN][1000 genomes] |
| rs9634473 | 0.99[ASN][1000 genomes] |
| rs9634474 | 0.99[ASN][1000 genomes] |
| rs9634584 | 0.99[ASN][1000 genomes] |
| rs9634585 | 0.99[ASN][1000 genomes] |
| rs9634586 | 0.99[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832719 | chr13:110512259-110655883 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 5 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr13:110553400-110563200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
| 2 | chr13:110556800-110558200 | Enhancers | Foreskin Fibroblast Primary Cells skin01 | Skin |
