Variant report

Variant	rs9559675
Chromosome Location	chr13:110581305-110581306
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs1556574	0.82[CHB][hapmap];0.85[ASN][1000 genomes]
rs1760599	0.85[ASN][1000 genomes]
rs1763034	0.85[ASN][1000 genomes]
rs1763035	0.85[ASN][1000 genomes]
rs1763036	0.85[ASN][1000 genomes]
rs1763037	0.85[ASN][1000 genomes]
rs1763038	0.85[ASN][1000 genomes]
rs1855440	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1932416	0.85[ASN][1000 genomes]
rs1953173	0.83[ASN][1000 genomes]
rs336205	0.85[ASN][1000 genomes]
rs336206	0.84[ASN][1000 genomes]
rs336207	0.85[ASN][1000 genomes]
rs336208	0.85[ASN][1000 genomes]
rs367400	0.85[ASN][1000 genomes]
rs371316	0.84[ASN][1000 genomes]
rs373872	0.85[ASN][1000 genomes]
rs378035	0.84[ASN][1000 genomes]
rs379193	0.85[ASN][1000 genomes]
rs384608	0.85[ASN][1000 genomes]
rs387811	0.83[ASN][1000 genomes]
rs392244	0.85[ASN][1000 genomes]
rs412905	0.83[ASN][1000 genomes]
rs415512	0.82[ASN][1000 genomes]
rs416090	0.85[ASN][1000 genomes]
rs424480	0.85[ASN][1000 genomes]
rs426171	0.84[ASN][1000 genomes]
rs426839	0.85[ASN][1000 genomes]
rs431199	0.83[ASN][1000 genomes]
rs434999	0.85[ASN][1000 genomes]
rs444409	0.85[ASN][1000 genomes]
rs56183751	0.85[ASN][1000 genomes]
rs6492232	0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66895129	0.83[ASN][1000 genomes]
rs693404	0.85[ASN][1000 genomes]
rs7321836	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7491948	0.85[ASN][1000 genomes]
rs7491951	0.84[ASN][1000 genomes]
rs7982038	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7982666	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7991082	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7991265	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7994830	0.85[ASN][1000 genomes]
rs7995631	0.85[ASN][1000 genomes]
rs8000780	0.85[ASN][1000 genomes]
rs8001698	0.85[ASN][1000 genomes]
rs9555645	0.81[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs9555646	0.82[CHB][hapmap];0.87[JPT][hapmap];0.85[ASN][1000 genomes]
rs9555647	0.81[CHB][hapmap];0.86[JPT][hapmap];0.85[ASN][1000 genomes]
rs9559671	0.85[ASN][1000 genomes]
rs9588050	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9634471	0.85[ASN][1000 genomes]
rs9634472	0.85[ASN][1000 genomes]
rs9634473	0.85[ASN][1000 genomes]
rs9634474	0.85[ASN][1000 genomes]
rs9634584	0.85[ASN][1000 genomes]
rs9634585	0.85[ASN][1000 genomes]
rs9634586	0.85[ASN][1000 genomes]
rs969718	0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832719	chr13:110512259-110655883	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110566800-110590400	Weak transcription	Aorta	Aorta
2	chr13:110571000-110586000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr13:110579800-110584400	Weak transcription	Muscle Satellite Cultured Cells	--

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