Variant report

Variant	rs4266456
Chromosome Location	chr5:40630445-40630446
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1057631	0.87[CEU][hapmap];1.00[ASN][1000 genomes]
rs10737963	0.86[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.83[LWK][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs13155724	1.00[ASN][1000 genomes]
rs13167906	1.00[ASN][1000 genomes]
rs13186505	1.00[ASN][1000 genomes]
rs2055645	1.00[ASN][1000 genomes]
rs34783322	1.00[ASN][1000 genomes]
rs35867196	1.00[ASN][1000 genomes]
rs4304113	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4345353	0.87[CEU][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.87[LWK][hapmap];0.85[MEX][hapmap];0.89[TSI][hapmap];0.90[YRI][hapmap];1.00[ASN][1000 genomes]
rs6882769	0.83[AFR][1000 genomes]
rs72747942	1.00[ASN][1000 genomes]
rs7724201	1.00[ASN][1000 genomes]
rs954686	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4266456	TTC33	Cis_1M	lymphoblastoid	RTeQTL
rs4266456	RPL37	cis	cerebellum	SCAN
rs4266456	RPL37	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40620800-40634200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr5:40624800-40634200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr5:40630000-40630600	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:40630000-40631000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr5:40630200-40630600	Enhancers	Primary B cells from peripheral blood	blood
6	chr5:40630200-40630600	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr5:40630200-40630600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr5:40630200-40630600	Enhancers	Dnd41	blood
9	chr5:40630200-40630800	Enhancers	Monocytes-CD14+_RO01746	blood
10	chr5:40630200-40631600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr5:40630400-40630600	Enhancers	Primary T cells from cord blood	blood
12	chr5:40630400-40630600	Enhancers	Primary hematopoietic stem cells	blood
13	chr5:40630400-40630600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
14	chr5:40630400-40630600	Enhancers	Primary T helper cells PMA-I stimulated	--
15	chr5:40630400-40631000	Enhancers	Primary B cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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