Variant report

Variant	rs72747942
Chromosome Location	chr5:40667256-40667257
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1057631	1.00[ASN][1000 genomes]
rs10737963	1.00[ASN][1000 genomes]
rs13155724	1.00[ASN][1000 genomes]
rs13167906	1.00[ASN][1000 genomes]
rs13186505	1.00[ASN][1000 genomes]
rs2055645	1.00[ASN][1000 genomes]
rs34783322	1.00[ASN][1000 genomes]
rs35867196	1.00[ASN][1000 genomes]
rs4266456	1.00[ASN][1000 genomes]
rs4304113	1.00[ASN][1000 genomes]
rs4345353	1.00[ASN][1000 genomes]
rs7724201	1.00[ASN][1000 genomes]
rs954686	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880993	chr5:40521648-40682550	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	38 gene(s)	inside rSNPs	diseases
2	nsv880539	chr5:40662257-40713645	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40655600-40669600	Weak transcription	Thymus	Thymus
2	chr5:40658800-40668800	Weak transcription	Primary T cells from cord blood	blood
3	chr5:40661200-40668800	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr5:40666000-40669200	Weak transcription	Fetal Thymus	thymus
5	chr5:40666200-40668800	Weak transcription	Dnd41	blood
6	chr5:40666800-40667600	Enhancers	HMEC	breast
7	chr5:40666800-40667600	Enhancers	Monocytes-CD14+_RO01746	blood
8	chr5:40667000-40667800	Enhancers	Hela-S3	cervix
9	chr5:40667200-40667400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr5:40667200-40667600	Enhancers	Muscle Satellite Cultured Cells	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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