Variant report

Variant	rs4266588
Chromosome Location	chr7:119256379-119256380
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11489530	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12112993	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs4266587	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs56834159	0.88[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs57199355	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs57503752	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs57693866	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs58402702	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs59671123	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs6956027	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73483307	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73483309	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73483311	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73483370	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs73483373	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949327	chr7:119179990-119402882	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv889114	chr7:119206096-119440159	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1020551	chr7:119232910-119292763	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119254600-119257000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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