Variant report

Variant	rs57693866
Chromosome Location	chr7:119207033-119207034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11489530	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12112993	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4266587	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4266588	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs56834159	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs57199355	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57503752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58402702	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59671123	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6956027	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483307	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483309	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483370	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73483373	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889100	chr7:118744450-119247571	Enhancers Weak transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1019377	chr7:119164442-119233633	Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1019921	chr7:119166254-119233633	Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv949327	chr7:119179990-119402882	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	esv3345886	chr7:119204050-119225361	Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
6	nsv889114	chr7:119206096-119440159	Enhancers Flanking Bivalent TSS/Enh Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:119206600-119207200	Flanking Bivalent TSS/Enh	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:119207000-119207200	Bivalent/Poised TSS	Breast Myoepithelial Primary Cells	Breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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