Variant report

Variant	rs4267703
Chromosome Location	chr4:74375921-74375922
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AFM-1	chr4:74375920-74376060	XLOC_003572
2	lnc-AFM-1	chr4:74375920-74376060	NONHSAT096858
3	lnc-AFM-1	chr4:74375846-74376060	NONHSAT096860

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs10004505	0.82[EUR][1000 genomes]
rs10016403	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10028196	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10028276	0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10029673	0.81[CEU][hapmap]
rs10212657	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10213305	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10805065	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10938077	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10938078	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10938079	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10938085	0.82[EUR][1000 genomes]
rs10938086	0.82[EUR][1000 genomes]
rs1158101	0.85[ASN][1000 genomes]
rs1159624	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11728915	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11733262	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11935001	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11939341	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11943798	0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12504448	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12508974	0.82[EUR][1000 genomes]
rs12510629	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13103378	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13107306	0.83[ASN][1000 genomes]
rs13120998	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13124940	0.91[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13144296	0.82[CEU][hapmap]
rs13150405	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13353732	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1358592	0.82[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.98[ASN][1000 genomes]
rs1528924	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1569204	0.81[EUR][1000 genomes]
rs1590115	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1590116	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16849461	0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16849484	0.83[ASN][1000 genomes]
rs16849508	0.86[CHB][hapmap];0.95[JPT][hapmap];0.85[ASN][1000 genomes]
rs16849727	0.86[CEU][hapmap]
rs1881611	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1894293	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1919469	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1919479	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1997332	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1997333	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2040354	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2071097	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2071098	0.83[ASN][1000 genomes]
rs2141465	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2141470	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2178290	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2178292	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2204736	0.94[ASN][1000 genomes]
rs28838047	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34238679	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34468776	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35233345	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35988516	0.96[ASN][1000 genomes]
rs3765639	0.81[ASN][1000 genomes]
rs4235119	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4267704	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4267705	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4438732	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4574378	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4618279	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4631010	0.95[ASN][1000 genomes]
rs4694170	0.82[CEU][hapmap]
rs4694173	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56011127	0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56384466	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6446937	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6446938	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6446939	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6446941	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6852149	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6852772	0.86[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs72647083	0.81[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7676460	0.89[ASN][1000 genomes]
rs9990707	0.81[EUR][1000 genomes]
rs9997572	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74374600-74383800	Weak transcription	Fetal Intestine Small	intestine
2	chr4:74374600-74399000	Weak transcription	Fetal Intestine Large	intestine
3	chr4:74375400-74376600	Genic enhancers	Liver	Liver

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