Variant report

Variant	rs11728915
Chromosome Location	chr4:74410237-74410238
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:124)

rs_ID	r²[population]
rs10004505	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10009048	0.85[AMR][1000 genomes]
rs10011419	0.82[EUR][1000 genomes]
rs10011536	0.86[AMR][1000 genomes]
rs10016403	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10019146	0.82[EUR][1000 genomes]
rs10019320	0.82[EUR][1000 genomes]
rs10020054	0.83[EUR][1000 genomes]
rs10021827	0.83[EUR][1000 genomes]
rs10028196	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10028276	0.83[ASN][1000 genomes]
rs10029673	0.83[EUR][1000 genomes]
rs10212657	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10213305	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10805065	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10938077	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10938078	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10938079	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10938085	0.80[EUR][1000 genomes]
rs10938086	0.80[EUR][1000 genomes]
rs10938088	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11729144	0.87[AMR][1000 genomes]
rs11733262	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11935001	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11943798	0.89[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1247651	0.83[EUR][1000 genomes]
rs1247659	0.85[AMR][1000 genomes]
rs1247668	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12503916	0.83[EUR][1000 genomes]
rs12504448	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12505842	0.82[EUR][1000 genomes]
rs12506668	0.82[EUR][1000 genomes]
rs12506675	0.82[EUR][1000 genomes]
rs12507775	0.83[EUR][1000 genomes]
rs12508974	0.80[EUR][1000 genomes]
rs12510629	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13103378	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13115877	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13120998	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13124940	0.80[ASN][1000 genomes]
rs13135124	0.87[AMR][1000 genomes]
rs13144296	0.82[EUR][1000 genomes]
rs13149172	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs13353732	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1358592	0.81[ASN][1000 genomes]
rs1528915	0.81[EUR][1000 genomes]
rs1528916	0.82[EUR][1000 genomes]
rs1528917	0.82[EUR][1000 genomes]
rs1528918	0.82[EUR][1000 genomes]
rs1528924	0.80[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1569204	0.82[EUR][1000 genomes]
rs1569207	0.85[AMR][1000 genomes]
rs1590115	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1590116	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16849628	0.83[EUR][1000 genomes]
rs16849629	0.83[EUR][1000 genomes]
rs16849651	0.83[EUR][1000 genomes]
rs16849656	0.83[EUR][1000 genomes]
rs16849659	0.83[EUR][1000 genomes]
rs16849675	0.82[EUR][1000 genomes]
rs16849677	0.82[EUR][1000 genomes]
rs16849727	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1881611	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1894293	0.80[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1919469	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1919479	0.80[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1997332	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1997333	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2008288	0.83[EUR][1000 genomes]
rs2040354	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2071097	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2141465	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2141470	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2178290	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2178292	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2204736	0.82[ASN][1000 genomes]
rs28407399	0.83[EUR][1000 genomes]
rs28450939	0.83[EUR][1000 genomes]
rs28612539	0.83[EUR][1000 genomes]
rs28693538	0.83[EUR][1000 genomes]
rs28838047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34238679	0.82[ASN][1000 genomes]
rs34468776	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34773614	0.82[EUR][1000 genomes]
rs34832471	0.84[EUR][1000 genomes]
rs34859660	0.82[EUR][1000 genomes]
rs35233345	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs35988516	0.83[ASN][1000 genomes]
rs3756073	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4235119	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4267703	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4267704	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4267705	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4438732	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4574378	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4618279	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4631010	0.83[ASN][1000 genomes]
rs4694173	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56011127	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56384466	0.85[ASN][1000 genomes]
rs62312137	0.87[AMR][1000 genomes]
rs6446937	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6446938	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6446939	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6446941	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6837506	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6852149	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs72647083	0.85[ASN][1000 genomes]
rs7665563	0.82[EUR][1000 genomes]
rs7665972	0.82[EUR][1000 genomes]
rs7667019	0.82[EUR][1000 genomes]
rs7667185	0.82[EUR][1000 genomes]
rs7674913	0.82[EUR][1000 genomes]
rs7676850	0.82[EUR][1000 genomes]
rs7676870	0.82[EUR][1000 genomes]
rs7676884	0.82[EUR][1000 genomes]
rs7682201	0.83[EUR][1000 genomes]
rs7687216	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7695792	0.82[EUR][1000 genomes]
rs7695946	0.82[EUR][1000 genomes]
rs7696502	0.82[EUR][1000 genomes]
rs997478	0.87[AMR][1000 genomes]
rs9997572	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9999939	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3430875	chr4:74243646-74420354	Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
3	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	esv3370533	chr4:74407613-74410861	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3440939	chr4:74407838-74410686	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74409800-74410400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
2	chr4:74409800-74410800	Enhancers	HepG2	liver

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