Variant report

Variant	rs13149172
Chromosome Location	chr4:74436926-74436927
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10004505	0.83[AMR][1000 genomes]
rs10009048	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10011536	0.96[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10016403	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs10938078	0.82[YRI][hapmap]
rs10938079	0.88[YRI][hapmap]
rs10938088	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11728915	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs11729144	1.00[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11733262	0.88[YRI][hapmap]
rs11943798	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs1247659	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13115877	0.91[AMR][1000 genomes]
rs13124940	0.86[YRI][hapmap]
rs13135124	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1569207	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16849727	0.91[AMR][1000 genomes]
rs1745300	0.92[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1881611	0.80[AMR][1000 genomes]
rs1919469	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs1997332	0.83[YRI][hapmap]
rs28838047	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs4235119	0.89[YRI][hapmap]
rs4267703	0.84[YRI][hapmap]
rs4574378	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs62312137	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6446937	0.81[YRI][hapmap]
rs6446938	0.82[YRI][hapmap]
rs6837506	0.90[AMR][1000 genomes]
rs997478	0.83[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9997572	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1001725	chr4:74354050-74860924	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv530126	chr4:74376622-74843892	Bivalent Enhancer Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:74434200-74437800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
2	chr4:74434400-74439600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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