Variant report

Variant	rs4268760
Chromosome Location	chr16:30816039-30816040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:22)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:22 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:30815951..30818451-chr16:30913360..30915131,3	MCF-7	breast:
2	chr16:30797708..30801530-chr16:30815356..30818567,4	K562	blood:
3	chr16:30815583..30820055-chr16:30823103..30827035,12	MCF-7	breast:
4	chr16:30814804..30819146-chr16:30884683..30888592,6	MCF-7	breast:
5	chr16:30795066..30800356-chr16:30815303..30822232,38	MCF-7	breast:
6	chr1:116959505..116962340-chr16:30816003..30818449,2	MCF-7	breast:
7	chr16:30815220..30818805-chr16:30903987..30908642,7	MCF-7	breast:
8	chr16:30802488..30809152-chr16:30815152..30818622,8	MCF-7	breast:
9	chr16:30787031..30789768-chr16:30814722..30816994,3	K562	blood:
10	chr16:30770612..30775392-chr16:30814901..30819311,7	MCF-7	breast:
11	chr16:30786103..30792958-chr16:30815720..30820350,14	MCF-7	breast:
12	chr16:30815766..30818502-chr16:30968235..30970702,3	MCF-7	breast:
13	chr16:30758002..30759689-chr16:30815311..30818147,2	MCF-7	breast:
14	chr16:30815909..30818029-chr16:30843864..30846035,2	MCF-7	breast:
15	chr16:30797148..30800499-chr16:30815356..30818471,7	K562	blood:
16	chr16:30706829..30711705-chr16:30815452..30818911,6	MCF-7	breast:
17	chr16:30794424..30800476-chr16:30814931..30820153,40	MCF-7	breast:
18	chr16:30759706..30762114-chr16:30815269..30817033,2	MCF-7	breast:
19	chr16:30815388..30818380-chr16:30912110..30914364,3	MCF-7	breast:
20	chr16:30815431..30819156-chr16:30931528..30936113,9	MCF-7	breast:
21	chr16:30785863..30791311-chr16:30814825..30818716,8	MCF-7	breast:
22	chr16:30752306..30754286-chr16:30815275..30817609,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000080603	Chromatin interaction
ENSG00000099381	Chromatin interaction
ENSG00000260852	Chromatin interaction
ENSG00000150281	Chromatin interaction
ENSG00000211591	Chromatin interaction
ENSG00000103549	Chromatin interaction
ENSG00000156873	Chromatin interaction
ENSG00000265991	Chromatin interaction
ENSG00000099385	Chromatin interaction
ENSG00000203865	Chromatin interaction
ENSG00000262721	Chromatin interaction
ENSG00000099364	Chromatin interaction
ENSG00000260083	Chromatin interaction
ENSG00000262026	Chromatin interaction
ENSG00000261840	Chromatin interaction
ENSG00000196118	Chromatin interaction
ENSG00000102870	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs12596394	0.86[AFR][1000 genomes]
rs12598056	0.88[AFR][1000 genomes]
rs12931844	0.88[AFR][1000 genomes]
rs1550477	0.81[AFR][1000 genomes]
rs4007812	0.85[AFR][1000 genomes]
rs4617878	0.88[AFR][1000 genomes]
rs4889504	0.81[AFR][1000 genomes]
rs57489882	0.81[AFR][1000 genomes]
rs57877247	0.87[AFR][1000 genomes]
rs71380412	0.90[AFR][1000 genomes]
rs7188077	0.81[AFR][1000 genomes]
rs7193412	0.81[AFR][1000 genomes]
rs8045293	0.90[AFR][1000 genomes]
rs8045624	0.96[AFR][1000 genomes]
rs8056105	0.84[AFR][1000 genomes]
rs893926	0.86[AFR][1000 genomes]
rs893927	0.88[AFR][1000 genomes]
rs9921630	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062456	chr16:30442166-31253997	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
2	nsv542898	chr16:30442166-31253997	Enhancers Active TSS Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	437 gene(s)	inside rSNPs	diseases
3	nsv469724	chr16:30632445-30840263	Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
4	nsv482704	chr16:30632445-30840263	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
5	nsv833188	chr16:30632446-30840263	Active TSS Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	143 gene(s)	inside rSNPs	diseases
6	nsv1064134	chr16:30640293-31087327	Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	238 gene(s)	inside rSNPs	diseases
7	nsv905728	chr16:30642867-30928970	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	171 gene(s)	inside rSNPs	diseases
8	nsv905729	chr16:30642867-31247924	Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	387 gene(s)	inside rSNPs	diseases
9	esv1825223	chr16:30669091-30971810	Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
10	nsv431451	chr16:30682399-31340999	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	350 gene(s)	inside rSNPs	diseases
11	nsv905732	chr16:30788182-30837210	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
12	nsv905733	chr16:30796919-31004812	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
13	nsv869652	chr16:30799471-30951038	Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	70 gene(s)	inside rSNPs	diseases
14	nsv1060384	chr16:30802415-30878838	Flanking Active TSS Strong transcription Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
15	nsv1059633	chr16:30803099-30867916	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:30800200-30816200	Weak transcription	Fetal Intestine Small	intestine
2	chr16:30808400-30816400	Weak transcription	Brain Hippocampus Middle	brain
3	chr16:30808600-30816200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr16:30809600-30816400	Weak transcription	Hela-S3	cervix
5	chr16:30810400-30816200	Weak transcription	Primary neutrophils fromperipheralblood	blood
6	chr16:30814200-30816400	Weak transcription	Adipose Nuclei	Adipose
7	chr16:30814400-30816200	Weak transcription	Primary T cells from cord blood	blood
8	chr16:30814400-30816400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr16:30814400-30816400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr16:30814400-30816400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr16:30814600-30816400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr16:30814800-30816200	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr16:30814800-30816400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr16:30814800-30816400	Weak transcription	Thymus	Thymus
15	chr16:30815000-30816200	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr16:30815000-30816400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr16:30815000-30816400	Weak transcription	Fetal Thymus	thymus
18	chr16:30815200-30816400	Weak transcription	HepG2	liver
19	chr16:30816000-30816200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr16:30816000-30816400	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
21	chr16:30816000-30816400	Enhancers	Primary T helper cells PMA-I stimulated	--
22	chr16:30816000-30816400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr16:30816000-30816400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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